RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 USP34Q70CQ2 3546 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 UNC80Q8N2C7 3258 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 ALPK3Q96L96 1907 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 A0A1W2PQ45 241 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 A0A1W2PQ67 120 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 A0A1W2PQY0 241 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 MYO1GB0I1T2 1018 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 H7C4K7 107 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 BCKDKO14874 412 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ATP6V1G1O75348 118 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CLDN9O95484 217 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 EBLN1P0CF75 366 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SDC1P18827 310 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 RPS3P23396 243 aaKnown RBP eCLIP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CD6P30203 668 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CCR7P32248 378 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TGFBR1P36897 503 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 RPIAP49247 311 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CLK3P49761 638 aaKnown RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 PHEXP78562 749 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 B4GALNT1Q00973 533 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CDH18Q13634 790 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TUBA3CQ13748 450 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TAF12Q16514 161 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 INO80DQ53TQ3 878 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CPZQ66K79 652 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 OR4F3Q6IEY1 312 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SLC8B1Q6J4K2 584 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 DOK6Q6PKX4 331 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 VTCN1Q7Z7D3 282 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TMEM150AQ86TG1 271 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TRIM74Q86UV6 250 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TRIM73Q86UV7 250 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 VRK3Q8IV63 474 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ADHFE1Q8IWW8 467 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ZCCHC7Q8N3Z6 543 aaKnown RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SVOPLQ8N434 492 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 AADATQ8N5Z0 425 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ARL10Q8N8L6 244 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ARL14EPQ8N8R7 260 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 NDNFQ8TB73 568 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SKA2Q8WVK7 121 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 FAR1Q8WVX9 515 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SELENOMQ8WWX9 145 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 NRBF2Q96F24 287 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 PYURFQ96I23 114 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CDK5RAP1Q96SZ6 601 aaKnown RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CLSTN3Q9BQT9 956 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 PRDM8Q9NQV8 689 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TBCCD1Q9NVR7 557 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SELENONQ9NZV5 590 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 PCDH10Q9P2E7 1040 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 FAM8A1Q9UBU6 413 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TRPS1Q9UHF7 1281 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ENPP5Q9UJA9 477 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 C3orf18Q9UK00 162 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 PCM1Q15154 2024 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TRBV5-4A0A0C4DH59 114 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 C16orf96A6NNT2 1141 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 FAM220BPB1ANY3 271 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CFAP99D6REC4 459 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CA12O43570 354 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 NDUFS2O75306 463 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SH3BGRLO75368 114 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 MTX2O75431 263 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF821O75541 412 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 SULT1C4O75897 302 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 RETP07949 1114 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 HOXB9P17482 250 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ITPKAP23677 461 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 S100A3P33764 101 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CTSOP43234 321 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 STK19P49842 368 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 DAPP51397 102 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 RAD23AP54725 363 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 BCL2L1Q07817 233 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 HSPA14Q0VDF9 509 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 MAD2L1Q13257 205 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 MTA1Q13330 715 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 DGCR6Q14129 220 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 EGFLAMQ63HQ2 1017 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TXNDC8Q6A555 127 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 NEK5Q6P3R8 708 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 CCDC81Q6ZN84 652 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 B3GNT8Q7Z7M8 397 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ZDHHC21Q8IVQ6 265 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 NXPE1Q8N323 547 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 GLB1L3Q8NCI6 653 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 OR7A2PQ8NGA2 310 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 MCOLN3Q8TDD5 553 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 C2orf15Q8WU43 125 aaKnown RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 TRUB1Q8WWH5 349 aaKnown RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 ITFG2Q969R8 447 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 VOPP1Q96AW1 172 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 APOLD1Q96LR9 279 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 RDH12Q96NR8 316 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 DPH2Q9BQC3 489 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-213ENST00000552720 KCNH6Q9H252 994 aa7.3□□□□□ -1.24
LIMA1-213ENST00000552720 MTRRQ9UBK8 725 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms