RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 LRRC56Q8IYG6 542 aaPredicted RBP11.65□□□□□ -0.54
CHD4-203ENST00000535717 PPFIBP2Q8ND30 876 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 AGBL5Q8NDL9 886 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 WDR36Q8NI36 951 aaKnown RBP11.65□□□□□ -0.54
CHD4-203ENST00000535717 EPS8L3Q8TE67 593 aaKnown RBP11.65□□□□□ -0.54
CHD4-203ENST00000535717 KCTD4Q8WVF5 259 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 SMPDL3AQ92484 453 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 PTERQ96BW5 349 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 NXNL1Q96CM4 212 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 MTBPQ96DY7 904 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 PRR11Q96HE9 360 aaPredicted RBP11.65□□□□□ -0.54
CHD4-203ENST00000535717 HIST1H2AHQ96KK5 128 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 CMKLR1Q99788 373 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 HIST1H2AJQ99878 128 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 H2AFJQ9BTM1 129 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 TRIM54Q9BYV2 358 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 PITPNM3Q9BZ71 974 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 VPS11Q9H270 941 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 C1GALT1Q9NS00 363 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 OCIAD1Q9NX40 245 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 ARL15Q9NXU5 204 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 UTP6Q9NYH9 597 aaKnown RBP11.65□□□□□ -0.54
CHD4-203ENST00000535717 STOX2Q9P2F5 926 aaPredicted RBP11.65□□□□□ -0.54
CHD4-203ENST00000535717 TBK1Q9UHD2 729 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 LOXL2Q9Y4K0 774 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 ASPMQ8IZT6 3477 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 WDFY3Q8IZQ1 3526 aa11.65□□□□□ -0.54
CHD4-203ENST00000535717 IQANK1A0A1B0GTG1 560 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 SLC9B1P1A6NJY1 282 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 SMIM23A6NLE4 172 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 PLD2O14939 933 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 GUCA1CO95843 209 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 FGF3P11487 239 aaPredicted RBP11.64□□□□□ -0.55
CHD4-203ENST00000535717 CCL4P13236 92 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 PVRP15151 417 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 ST6GAL1P15907 406 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 NELFEP18615 380 aaKnown RBP11.64□□□□□ -0.55
CHD4-203ENST00000535717 CDH3P22223 829 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 PSMB5P28074 263 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 OAS2P29728 719 aaKnown RBP11.64□□□□□ -0.55
CHD4-203ENST00000535717 ETV5P41161 510 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 KCNC1P48547 511 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 AP1S2P56377 157 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 GABREP78334 506 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 EIF3IQ13347 325 aaKnown RBP11.64□□□□□ -0.55
CHD4-203ENST00000535717 RTP5Q14D33 572 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 ZXDCQ2QGD7 858 aaPredicted RBP11.64□□□□□ -0.55
CHD4-203ENST00000535717 FOXR1Q6PIV2 292 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 AGTRAPQ6RW13 159 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 SUSD1Q6UWL2 747 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 ISCA2Q86U28 154 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 SYTL1Q8IYJ3 562 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 CARFQ8N187 725 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 PLD6Q8N2A8 252 aaKnown RBP11.64□□□□□ -0.55
CHD4-203ENST00000535717 FBXO39Q8N4B4 442 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 BMPERQ8N8U9 685 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 OR2A1Q8NGT9 310 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 MZB1Q8WU39 189 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 KIAA1191Q96A73 305 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 SLC22A18Q96BI1 424 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 SLC41A2Q96JW4 573 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 GPR78Q96P69 363 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 TRAPPC9Q96Q05 1148 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 NRSN2Q9GZP1 204 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 KLHL25Q9H0H3 589 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 ALG9Q9H6U8 611 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 POLR1BQ9H9Y6 1135 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 PPCSQ9HAB8 311 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 NMRAL1Q9HBL8 299 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 SIDT1Q9NXL6 827 aaKnown RBP11.64□□□□□ -0.55
CHD4-203ENST00000535717 EURLQ9NYK6 297 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 AKAP7Q9P0M2 348 aaPredicted RBP11.64□□□□□ -0.55
CHD4-203ENST00000535717 OARD1Q9Y530 152 aa11.64□□□□□ -0.55
CHD4-203ENST00000535717 SNRNP200O75643 2136 aaKnown RBP11.63□□□□□ -0.55
CHD4-203ENST00000535717 IGF2RP11717 2491 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 A0A0J9YY10 115 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 PABPN1LA6NDY0 278 aaKnown RBP11.63□□□□□ -0.55
CHD4-203ENST00000535717 ZNF839A8K0R7 811 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 EFCAB7A8K855 629 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 FOXO6A8MYZ6 492 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 PRAMEF10O60809 474 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 KLHL2O95198 593 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 ZBTB11O95625 1053 aaPredicted RBP11.63□□□□□ -0.55
CHD4-203ENST00000535717 JMJD7P0C870 316 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 TFEBP19484 476 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 ITIH1P19827 911 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 RPA3P35244 121 aaPredicted RBP11.63□□□□□ -0.55
CHD4-203ENST00000535717 YBX1P67809 324 aaKnown RBP11.63□□□□□ -0.55
CHD4-203ENST00000535717 SH3BP2P78314 561 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 HSD11B2P80365 405 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 CDKL1Q00532 357 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 TSTA3Q13630 321 aaPredicted RBP11.63□□□□□ -0.55
CHD4-203ENST00000535717 KCNAB1Q14722 419 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 RASA2Q15283 850 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 TGFBIQ15582 683 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 SF1Q15637 639 aaKnown RBP11.63□□□□□ -0.55
CHD4-203ENST00000535717 ZIC1Q15915 447 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 FAM83EQ2M2I3 478 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 FRA10AC1Q70Z53 315 aa11.63□□□□□ -0.55
CHD4-203ENST00000535717 FAM129CQ86XR2 697 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms