RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ITGA3P26006 1051 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 EIF3BP55884 814 aaKnown RBP14.15□□□□□ -0.14
VPS28-215ENST00000531924 CRADDP78560 199 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 FAM214AQ32MH5 1076 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 YOD1Q5VVQ6 348 aaPredicted RBP14.15□□□□□ -0.14
VPS28-215ENST00000531924 MRNIPQ6NTE8 343 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 FIGLAQ6QHK4 219 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 PPP1R32Q7Z5V6 425 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 PRR7Q8TB68 274 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 LKAAEAR1Q8TD35 194 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 MAGEC3Q8TD91 643 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 SSC4DQ8WTU2 575 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 FKBP10Q96AY3 582 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 EIF2B3Q9NR50 452 aaKnown RBP14.15□□□□□ -0.14
VPS28-215ENST00000531924 CUTCQ9NTM9 273 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 FAM169AQ9Y6X4 670 aa14.15□□□□□ -0.14
VPS28-215ENST00000531924 PRRC2CQ9Y520 2896 aaKnown RBP14.15□□□□□ -0.14
VPS28-215ENST00000531924 RP1L1Q8IWN7 2480 aaPredicted RBP14.15□□□□□ -0.14
VPS28-215ENST00000531924 TNRC6AQ8NDV7 1962 aaKnown RBP14.14□□□□□ -0.15
VPS28-215ENST00000531924 RELNP78509 3460 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 TCP11X1B4DZS4 312 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 AGPSO00116 658 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 DSCR3O14972 297 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 ITGAXP20702 1163 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 CCNFP41002 786 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 AIMP2Q13155 320 aaKnown RBP14.14□□□□□ -0.15
VPS28-215ENST00000531924 ELOAQ14241 798 aaKnown RBP14.14□□□□□ -0.15
VPS28-215ENST00000531924 EIF2S3LQ2VIR3 472 aaKnown RBP14.14□□□□□ -0.15
VPS28-215ENST00000531924 PLEKHN1Q494U1 663 aaPredicted RBP14.14□□□□□ -0.15
VPS28-215ENST00000531924 RNF187Q5TA31 235 aaPredicted RBP14.14□□□□□ -0.15
VPS28-215ENST00000531924 MEI1Q5TIA1 1274 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 MRPL14Q6P1L8 145 aaKnown RBP14.14□□□□□ -0.15
VPS28-215ENST00000531924 CNSTQ6PJW8 725 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 OVCH1Q7RTY7 1134 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 LMNTD1Q8N9Z9 388 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 Q8NA96 180 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 ZUFSPQ96AP4 578 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 NACC2Q96BF6 587 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 WDR54Q9H977 334 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 IL1RAPL1Q9NZN1 696 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 DRG1Q9Y295 367 aaKnown RBP14.14□□□□□ -0.15
VPS28-215ENST00000531924 ZKSCAN5Q9Y2L8 839 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 SPTBP11277 2137 aa14.14□□□□□ -0.15
VPS28-215ENST00000531924 TARM1B6A8C7 271 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 H3BMM5 538 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 SRPX2O60687 465 aaPredicted RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 VAPBO95292 243 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 ALBP02768 609 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 UMODP07911 640 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 ERVK-10P10266 1014 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 MMP11P24347 488 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 NMBRP28336 390 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 FMO4P31512 558 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 FOXL2P58012 376 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 VSX2P58304 361 aaPredicted RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 SARNPP82979 210 aaKnown RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 MRPL49Q13405 166 aaKnown RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 GAS2L3Q86XJ1 694 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 CISD2Q8N5K1 135 aaKnown RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 MIPEPQ99797 713 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 P2RY12Q9H244 342 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 MRM3Q9HC36 420 aaKnown RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 LZTFL1Q9NQ48 299 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 HOMER3Q9NSC5 361 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 CUEDC1Q9NWM3 386 aaPredicted RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 PLEKHB1Q9UF11 243 aaPredicted RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 TSR3Q9UJK0 312 aaKnown RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 FBXL4Q9UKA2 621 aa14.13□□□□□ -0.15
VPS28-215ENST00000531924 NXT1Q9UKK6 140 aaKnown RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 USP9YO00507 2555 aaPredicted RBP14.13□□□□□ -0.15
VPS28-215ENST00000531924 CNOT3O75175 753 aaKnown RBP14.12□□□□□ -0.15
VPS28-215ENST00000531924 C1orf105O95561 183 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 FGGP02679 453 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 EIF2S1P05198 315 aaKnown RBP14.12□□□□□ -0.15
VPS28-215ENST00000531924 PAMP19021 973 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 CHRM3P20309 590 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 RPS3P23396 243 aaKnown RBP eCLIP14.12□□□□□ -0.156e-10■■■□□ 17.2
VPS28-215ENST00000531924 MCM3P25205 808 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 MGAT1P26572 445 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 BDKRB1P46663 353 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 OR1D4P47884 311 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 GLRBP48167 497 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 OCA2Q04671 838 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 GRB7Q14451 532 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 NAA25Q14CX7 972 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 NR6A1Q15406 480 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 RBBP7Q16576 425 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 WASHC2DQ5SRD0 308 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 FCRL6Q6DN72 434 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 CASC4Q6P4E1 433 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 DRICH1Q6PGQ1 229 aaPredicted RBP14.12□□□□□ -0.15
VPS28-215ENST00000531924 IGFL3Q6UXB1 125 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 SHISA6Q6ZSJ9 500 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 METTL27Q8N6F8 245 aaPredicted RBP14.12□□□□□ -0.15
VPS28-215ENST00000531924 SNRNP40Q96DI7 357 aaKnown RBP14.12□□□□□ -0.15
VPS28-215ENST00000531924 C19orf60Q96EN9 201 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 MENTQ9BUN1 341 aa14.12□□□□□ -0.15
VPS28-215ENST00000531924 SOX17Q9H6I2 414 aaPredicted RBP14.12□□□□□ -0.15
VPS28-215ENST00000531924 ZNF552Q9H707 407 aaPredicted RBP14.12□□□□□ -0.15
VPS28-215ENST00000531924 TREX1Q9NSU2 369 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms