RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 OTUD6BQ8N6M0 293 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 ZSCAN1Q8NBB4 408 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 TCTN2Q96GX1 697 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 GBP5Q96PP8 586 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 PKP4Q99569 1192 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 NDNQ99608 321 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 GPR21Q99679 349 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 AARSD1Q9BTE6 412 aaKnown RBP10.25□□□□□ -0.77
CD44-227ENST00000528086 ACTR5Q9H9F9 607 aaPredicted RBP10.25□□□□□ -0.77
CD44-227ENST00000528086 IARS2Q9NSE4 1012 aaKnown RBP10.25□□□□□ -0.77
CD44-227ENST00000528086 C20orf96Q9NUD7 363 aaPredicted RBP10.25□□□□□ -0.77
CD44-227ENST00000528086 SAMD15Q9P1V8 674 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 ASIC3Q9UHC3 531 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 IKZF3Q9UKT9 509 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 DHRS7Q9Y394 339 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 KLK4Q9Y5K2 254 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 MAD1L1Q9Y6D9 718 aa10.25□□□□□ -0.77
CD44-227ENST00000528086 NUP210LQ5VU65 1888 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 GOLGA6L10A0A0M3HER8 536 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 B8ZZF3 427 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 C21orf140B9A014 251 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 DNAJB5O75953 348 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 TSPAN12O95859 305 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 AHSGP02765 367 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 PGAM1P18669 254 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 CHRM3P20309 590 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 ELK3P41970 407 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 ITGA8P53708 1063 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 ITGA1P56199 1179 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 DR1Q01658 176 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 NFATC3Q12968 1075 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 COLEC12Q5KU26 742 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 TMTC4Q5T4D3 741 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 TEDDM1Q5T9Z0 273 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 FBXO42Q6P3S6 717 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 FIGLAQ6QHK4 219 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 PIWIL4Q7Z3Z4 852 aaKnown RBP10.24□□□□□ -0.77
CD44-227ENST00000528086 KCNMB4Q86W47 210 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 MCATQ8IVS2 390 aaKnown RBP10.24□□□□□ -0.77
CD44-227ENST00000528086 CPNE9Q8IYJ1 553 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 ARHGEF39Q8N4T4 335 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 ZNF655Q8N720 491 aaPredicted RBP10.24□□□□□ -0.77
CD44-227ENST00000528086 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.24□□□□□ -0.77
CD44-227ENST00000528086 ASB11Q8WXH4 323 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 KCNJ9Q92806 393 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 MR1Q95460 341 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 KIAA1143Q96AT1 154 aaPredicted RBP10.24□□□□□ -0.77
CD44-227ENST00000528086 MCMBPQ9BTE3 642 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 SLC6A20Q9NP91 592 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 SMYD2Q9NRG4 433 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 EURLQ9NYK6 297 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 KLHL42Q9P2K6 505 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 DHCR7Q9UBM7 475 aaKnown RBP10.24□□□□□ -0.77
CD44-227ENST00000528086 ADAMTS6Q9UKP5 1117 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 FARSAQ9Y285 508 aaKnown RBP10.24□□□□□ -0.77
CD44-227ENST00000528086 PSAT1Q9Y617 370 aa10.24□□□□□ -0.77
CD44-227ENST00000528086 LOC105369274A0A096LPK9 316 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 LOC102723532A0A0G2JNH3 316 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 CDC14CA4D256 554 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 CTAGE9A4FU28 777 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 E7ESA3 106 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 H3BMM5 538 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 MASP2O00187 686 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 KPNA5O15131 536 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 PIAS1O75925 651 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 RECKO95980 971 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 MT-ND3P03897 115 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 CCNYL3P0C7X3 344 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 PAMP19021 973 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 CHAF1BQ13112 559 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 KCNAB2Q13303 367 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 THOC5Q13769 683 aaKnown RBP10.23□□□□□ -0.77
CD44-227ENST00000528086 MORF4L2Q15014 288 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 TMED2Q15363 201 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 UGT8Q16880 541 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 BBS9Q3SYG4 887 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 C1orf189Q5VU69 101 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 FRMPD2BQ6IN97 320 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 RHBDD2Q6NTF9 364 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 SUSD1Q6UWL2 747 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 TMEM207Q6UWW9 146 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 NEK10Q6ZWH5 1172 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 COX15Q7KZN9 410 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 OR4N4Q8N0Y3 316 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 ENDOVQ8N8Q3 282 aaKnown RBP10.23□□□□□ -0.77
CD44-227ENST00000528086 PPFIBP2Q8ND30 876 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 OR2L3Q8NG85 312 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 OR9A1PQ8NGU1 263 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 ZNF480Q8WV37 535 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.23□□□□□ -0.77
CD44-227ENST00000528086 RAD51AP1Q96B01 352 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 ABHD17AQ96GS6 310 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 CATSPER2Q96P56 530 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 KRT12Q99456 494 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 OLFM1Q99784 485 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 MIPEPQ99797 713 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 MESP1Q9BRJ9 268 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 EFHD1Q9BUP0 239 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 TSSK1BQ9BXA7 367 aa10.23□□□□□ -0.77
CD44-227ENST00000528086 GPR87Q9BY21 358 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms