RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 SPENQ96T58 3664 aaKnown RBP11.08□□□□□ -0.64
HMGCS1-204ENST00000507293 HIVEP3Q5T1R4 2406 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 KRT87PA6NCN2 255 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 AGPSO00116 658 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 DSCR3O14972 297 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 CD3EAPO15446 510 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 KLHL41O60662 606 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 ALOX12BO75342 701 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 IPO13O94829 963 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 SLCO2B1O94956 709 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 ITGA3P26006 1051 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 RPL22P35268 128 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 GRIA3P42263 894 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 TTPAP49638 278 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 CRADDP78560 199 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 GRM7Q14831 915 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 NR6A1Q15406 480 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 SF1Q15637 639 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 ZC3H12BQ5HYM0 836 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 PCID2Q5JVF3 399 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 OVCH1Q7RTY7 1134 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 GAS2L3Q86XJ1 694 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 CISD2Q8N5K1 135 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 METTL27Q8N6F8 245 aaPredicted RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 GSDMBQ8TAX9 411 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 INPP5DQ92835 1189 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 PANX3Q96QZ0 392 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 SELENOSQ9BQE4 189 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 RAB11FIP5Q9BXF6 653 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 P2RY12Q9H244 342 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 ZBTB20Q9HC78 741 aaPredicted RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 SLC6A20Q9NP91 592 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 ATP13A2Q9NQ11 1180 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 EIF2B3Q9NR50 452 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 CUTCQ9NTM9 273 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 GNPTGQ9UJJ9 305 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 CDC23Q9UJX2 597 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 FBXL4Q9UKA2 621 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 GUCA1BQ9UMX6 200 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 RUVBL2Q9Y230 463 aaKnown RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 NFS1Q9Y697 457 aa11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 RP1L1Q8IWN7 2480 aaPredicted RBP11.07□□□□□ -0.64
HMGCS1-204ENST00000507293 MDC1Q14676 2089 aaKnown RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 A1L4Q6 167 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 PRICKLE3O43900 615 aaPredicted RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 NDUFS3O75489 264 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 ONECUT2O95948 504 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 PIM1P11309 404 aaPredicted RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 MMP11P24347 488 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 PSMB5P28074 263 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 NMBRP28336 390 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 CDC25BP30305 580 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 EIF3BP55884 814 aaKnown RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 SOX8P57073 446 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 BASP1P80723 227 aaKnown RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 AIMP2Q13155 320 aaKnown RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 SIX1Q15475 284 aaPredicted RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 NKG7Q16617 165 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 CCSMST1Q4G0I0 132 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 TCTE1Q5JU00 501 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 TTC23LQ6PF05 361 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 IGFL3Q6UXB1 125 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 SHISA6Q6ZSJ9 500 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 ZADH2Q8N4Q0 377 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 DTWD1Q8N5C7 304 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 OTUD6BQ8N6M0 293 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 TTC29Q8NA56 475 aaPredicted RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 DENND1AQ8TEH3 1009 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 SKA2Q8WVK7 121 aaPredicted RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 TM9SF4Q92544 642 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 RAD51AP1Q96B01 352 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 SPSB2Q99619 263 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 TSGA10Q9BZW7 698 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 WDR54Q9H977 334 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 TREX1Q9NSU2 369 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 CTSFQ9UBX1 484 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 TSR3Q9UJK0 312 aaKnown RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 TTC7AQ9ULT0 858 aaPredicted RBP11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 HS3ST3B1Q9Y662 390 aa11.06□□□□□ -0.64
HMGCS1-204ENST00000507293 SOCS6O14544 535 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 NRP2O60462 931 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 CTSVO60911 334 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 FKBP9O95302 570 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 MED26O95402 600 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 C1orf105O95561 183 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 DDAH2O95865 285 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 ALBP02768 609 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 RPS3P23396 243 aaKnown RBP eCLIP11.05□□□□□ -0.646e-13■■■□□ 17.8
HMGCS1-204ENST00000507293 MGAT1P26572 445 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 OR1D4P47884 311 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 GLRBP48167 497 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 VSX2P58304 361 aaPredicted RBP11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 RPS6KA1Q15418 735 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 CCNG2Q16589 344 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 CRB2Q5IJ48 1285 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 CTSL3PQ5NE16 218 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 MEI1Q5TIA1 1274 aa11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 YOD1Q5VVQ6 348 aaPredicted RBP11.05□□□□□ -0.64
HMGCS1-204ENST00000507293 PRAMEF13Q5VWM6 474 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms