RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 BCAP31P51572 246 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 BOP1Q14137 746 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 CRY1Q16526 586 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 SERPINA13PQ6UXR4 307 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 THAP5Q7Z6K1 395 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 TCEAL8Q8IYN2 117 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 PACRGLQ8N7B6 248 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ZBTB8BQ8NAP8 495 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ABHD11Q8NFV4 315 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ZFP90Q8TF47 636 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 RPL3LQ92901 407 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 CEP295NLQ96MC4 621 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 RAD21L1Q9H4I0 556 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 HPS4Q9NQG7 708 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ITM2CQ9NQX7 267 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 FAM118AQ9NWS6 357 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 ARL15Q9NXU5 204 aa16.12■□□□□ 0.17
CCDC88B-210ENST00000494566 KIAA0100Q14667 2235 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 ULK1O75385 1050 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 FCGR1AP12314 374 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 CRHBPP24387 322 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 ITGB8P26012 769 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 SERPINA4P29622 427 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 EEFSECP57772 596 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 PTSQ03393 145 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 SLC39A5Q6ZMH5 540 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 Q6ZVU0 165 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 DSG4Q86SJ6 1040 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 BEND7Q8N7W2 519 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 SLC47A1Q96FL8 570 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 ACTR8Q9H981 624 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 hCG_2039718K7EN88 272 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 CCL16O15467 120 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 CDH3P22223 829 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 PSMB9P28065 219 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 EPHA2P29317 976 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 ALDH3A2P51648 485 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 GRIK2Q13002 908 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 AASDHQ4L235 1098 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 DHRS4L2Q6PKH6 230 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 DPY19L3Q6ZPD9 716 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 SLCO6A1Q86UG4 719 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 TMEM25Q86YD3 366 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 TSPEARQ8WU66 669 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 SLC13A3Q8WWT9 602 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 FOXJ1Q92949 421 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 TAMM41Q96BW9 452 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 FAM210AQ96ND0 272 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF583Q96ND8 569 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 MTG2Q9H4K7 406 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 SPG21Q9NZD8 308 aa16.11■□□□□ 0.17
CCDC88B-210ENST00000494566 LEFTY2O00292 366 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 FKTNO75072 461 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 FADS2O95864 444 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 OLFM2O95897 454 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 CCR2P41597 374 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 RPIAP49247 311 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 RGS21Q2M5E4 152 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 RBM12BQ8IXT5 1001 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 SORCS1Q8WY21 1168 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 SCAMP4Q969E2 229 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 TSSK3Q96PN8 268 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 MBOAT4Q96T53 435 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 SLC46A2Q9BY10 475 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 DPY30Q9C005 99 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 TUBA8Q9NY65 449 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 SLC25A37Q9NYZ2 338 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 ERVK-18Q9QC07 812 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 PDE10AQ9Y233 779 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 DLGAP4Q9Y2H0 992 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 TRBV5-4A0A0C4DH59 114 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 CDH1P12830 882 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 EPORP19235 508 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 RPS3P23396 243 aaKnown RBP eCLIP16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 HTR1EP28566 365 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 KIAA0040Q15053 153 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 CHDHQ8NE62 594 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 BPIFB1Q8TDL5 484 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 CD320Q9NPF0 282 aa16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 KIAA1522Q9P206 1035 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 PAIP2BQ9ULR5 123 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-210ENST00000494566 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 NEDD8-MDP1E9PL57 170 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 AREL1O15033 823 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 SERPINA1P01009 418 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 EPB42P16452 691 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 ITPKAP23677 461 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 WEE1P30291 646 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 NCS1P62166 190 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 MAPKAPK3Q16644 382 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 ZNF555Q8NEP9 628 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 NETO1Q8TDF5 533 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 GTF2H4Q92759 462 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 TCEAL4Q96EI5 215 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 NEURL2Q9BR09 285 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 INPP5KQ9BT40 448 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 ATG10Q9H0Y0 220 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 LRTM1Q9HBL6 345 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 VNN3Q9NY84 501 aa16.09■□□□□ 0.17
CCDC88B-210ENST00000494566 TMPRSS11EQ9UL52 423 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms