RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 OSBPL9Q96SU4 736 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 SYNPO2LQ9H987 977 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 PCDHGA9Q9Y5G4 932 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 PTPN13Q12923 2485 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 ANKRD12Q6UB98 2062 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 FAM237BA0A1B0GVD1 139 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 MED26O95402 600 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 ESR1P03372 595 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 RPN2P04844 631 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 HBQ1P09105 142 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 ERGP11308 486 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 MLNP12872 115 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 MCM3P25205 808 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 CCL11P51671 97 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 CLCN7P51798 805 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 ARMC3Q5W041 872 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 MRPL14Q6P1L8 145 aaKnown RBP13.54□□□□□ -0.24
UPF3A-204ENST00000475218 FIGLAQ6QHK4 219 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 DENND6AQ8IWF6 608 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 OTUD6BQ8N6M0 293 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 FDCSPQ8NFU4 85 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 PROKR1Q8TCW9 393 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 SIGLEC10Q96LC7 697 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 RRAGDQ9NQL2 400 aaPredicted RBP13.54□□□□□ -0.24
UPF3A-204ENST00000475218 PLAAQ9Y263 795 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 KLK4Q9Y5K2 254 aa13.54□□□□□ -0.24
UPF3A-204ENST00000475218 ARHGEF33A8MVX0 844 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 MASP2O00187 686 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 PGRMC1O00264 195 aaKnown RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 KPNA5O15131 536 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 KDM1AO60341 852 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 PHF2O75151 1096 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 UMODP07911 640 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 ATXN8OSP0DMR3 200 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 ATP5DP30049 168 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SRSF1Q07955 248 aaKnown RBP eCLIP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 CYP2A13Q16696 494 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 NKAIN1Q4KMZ8 207 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 RNF187Q5TA31 235 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 ZNF470Q6ECI4 717 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 TLDC1Q6P9B6 456 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 COX15Q7KZN9 410 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 MRGPREQ86SM8 312 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 ACTRT1Q8TDG2 376 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 N4BP2L2Q92802 583 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 RAD51AP1Q96B01 352 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SLC22A18Q96BI1 424 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 ZNF669Q96BR6 464 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 DHRS4Q9BTZ2 278 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 NUDT9Q9BW91 350 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SLC7A5P2Q9GIP4 190 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SLC39A10Q9ULF5 831 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 USP9XQ93008 2570 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SDR42E2A6NKP2 422 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 KIF5CO60282 957 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 ONECUT2O95948 504 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 PKMP14618 531 aaKnown RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 AGXTP21549 392 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 MLLT10P55197 1068 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 DCDP81605 110 aaKnown RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 CTBP1Q13363 440 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 DHX34Q14147 1143 aaKnown RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SF1Q15637 639 aaKnown RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 NADK2Q4G0N4 442 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 RNASEH2BQ5TBB1 312 aaKnown RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 MLIPQ5VWP3 458 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 FRMPD2BQ6IN97 320 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 CASC4Q6P4E1 433 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 PPP1R32Q7Z5V6 425 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SDCCAG8Q86SQ7 713 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 OR2L3Q8NG85 312 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 MIB2Q96AX9 1013 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 MIPEPQ99797 713 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SLC25A23Q9BV35 468 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SLC6A20Q9NP91 592 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 ACSS2Q9NR19 701 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 FBXO6Q9NRD1 293 aaPredicted RBP13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SNX12Q9UMY4 172 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 SRPK3Q9UPE1 567 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 NUP210LQ5VU65 1888 aa13.53□□□□□ -0.24
UPF3A-204ENST00000475218 PCM1Q15154 2024 aa13.52□□□□□ -0.24
UPF3A-204ENST00000475218 LRRK2Q5S007 2527 aa13.52□□□□□ -0.24
UPF3A-204ENST00000475218 IGKV1-8A0A0C4DH67 115 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 CLEC18AA5D8T8 446 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 C9J4A7 227 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 H3BMM5 538 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 MYO1CO00159 1063 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 PSIP1O75475 530 aaKnown RBP13.52□□□□□ -0.25
UPF3A-204ENST00000475218 OTX2P32243 289 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 SLC1A2P43004 574 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 TIAL1Q01085 375 aaKnown RBP eCLIP13.52□□□□□ -0.25
UPF3A-204ENST00000475218 KLHL38Q2WGJ6 581 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 CLEC18BQ6UXF7 455 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 TEX19Q8NA77 164 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 CLEC18CQ8NCF0 446 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 OR2Y1Q8NGV0 311 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 SKA2Q8WVK7 121 aaPredicted RBP13.52□□□□□ -0.25
UPF3A-204ENST00000475218 RAB11FIP5Q9BXF6 653 aa13.52□□□□□ -0.25
UPF3A-204ENST00000475218 PLAC1Q9HBJ0 212 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms