RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RCBTB1Q8NDN9 531 aa12□□□□□ -0.49
USP40-205ENST00000430158 OR2A1Q8NGT9 310 aa12□□□□□ -0.49
USP40-205ENST00000430158 MCOLN3Q8TDD5 553 aa12□□□□□ -0.49
USP40-205ENST00000430158 EPS8L3Q8TE67 593 aaKnown RBP12□□□□□ -0.49
USP40-205ENST00000430158 KCTD4Q8WVF5 259 aa12□□□□□ -0.49
USP40-205ENST00000430158 NXNL1Q96CM4 212 aa12□□□□□ -0.49
USP40-205ENST00000430158 ZDHHC12Q96GR4 267 aa12□□□□□ -0.49
USP40-205ENST00000430158 CCDC138Q96M89 665 aa12□□□□□ -0.49
USP40-205ENST00000430158 RAB11FIP5Q9BXF6 653 aa12□□□□□ -0.49
USP40-205ENST00000430158 UNKQ9C0B0 810 aaKnown RBP12□□□□□ -0.49
USP40-205ENST00000430158 ZNF768Q9H5H4 540 aaKnown RBP12□□□□□ -0.49
USP40-205ENST00000430158 PPCSQ9HAB8 311 aa12□□□□□ -0.49
USP40-205ENST00000430158 SIDT1Q9NXL6 827 aaKnown RBP12□□□□□ -0.49
USP40-205ENST00000430158 STOX2Q9P2F5 926 aaPredicted RBP12□□□□□ -0.49
USP40-205ENST00000430158 PSMC3IPQ9P2W1 217 aaPredicted RBP12□□□□□ -0.49
USP40-205ENST00000430158 ACOT9Q9Y305 439 aa12□□□□□ -0.49
USP40-205ENST00000430158 KLK4Q9Y5K2 254 aa12□□□□□ -0.49
USP40-205ENST00000430158 FREM2Q5SZK8 3169 aa12□□□□□ -0.49
USP40-205ENST00000430158 FER1L5A0AVI2 2057 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 SDK2Q58EX2 2172 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 A0A087X1B8 175 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 CCDC187A0A096LP49 1063 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 PIPSLA2A3N6 862 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 CCDC151A5D8V7 595 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 TLCD2A6NGC4 264 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 FOXO6A8MYZ6 492 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 C2orf74A8MZ97 194 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 KDM1AO60341 852 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 KRT37O76014 449 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 KLHL2O95198 593 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 LTA4HP09960 611 aaKnown RBP11.99□□□□□ -0.49
USP40-205ENST00000430158 MTHFD2P13995 350 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 TYK2P29597 1187 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 HSD17B2P37059 387 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 PNLIPRP1P54315 467 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 AP1S2P56377 157 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 YBX1P67809 324 aaKnown RBP11.99□□□□□ -0.49
USP40-205ENST00000430158 CDKL1Q00532 357 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 RTP5Q14D33 572 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 ZIC1Q15915 447 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 SLC5A12Q1EHB4 618 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 IRGCQ6NXR0 463 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 TTC23LQ6PF05 361 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 FAM92BQ6ZTR7 304 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 TMEM151AQ8N4L1 468 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 MYRIPQ8NFW9 859 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 OR56A3Q8NH54 315 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 HNRNPLLQ8WVV9 542 aaKnown RBP11.99□□□□□ -0.49
USP40-205ENST00000430158 FBXL8Q96CD0 374 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 MTBPQ96DY7 904 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 TRAPPC9Q96Q05 1148 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 ATOH8Q96SQ7 321 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 CCDC77Q9BR77 488 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 NRSN2Q9GZP1 204 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 CHRNA10Q9GZZ6 450 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 C1GALT1Q9NS00 363 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 ZNF358Q9NW07 568 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 LGALS13Q9UHV8 139 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 OARD1Q9Y530 152 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 IKBKGQ9Y6K9 419 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 DMXL2Q8TDJ6 3036 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 WDFY3Q8IZQ1 3526 aa11.99□□□□□ -0.49
USP40-205ENST00000430158 A0A1W2PPM1 405 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 SLC9B1P1A6NJY1 282 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 A8MU76 341 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 PRAMEF10O60809 474 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 MPOP05164 745 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 SBK3P0C264 359 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 FGF3P11487 239 aaPredicted RBP11.98□□□□□ -0.49
USP40-205ENST00000430158 COL6A2P12110 1019 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 CCL4P13236 92 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 PVRP15151 417 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 ST6GAL1P15907 406 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 NELFEP18615 380 aaKnown RBP11.98□□□□□ -0.49
USP40-205ENST00000430158 CYP2A7P20853 494 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 MAP4P27816 1152 aaKnown RBP11.98□□□□□ -0.49
USP40-205ENST00000430158 PSMB5P28074 263 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 ETV5P41161 510 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 SLCO1A2P46721 670 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 GABRA4P48169 554 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 CDKL4Q5MAI5 379 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 SNAP47Q5SQN1 464 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 PHF19Q5T6S3 580 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 CACHD1Q5VU97 1274 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 IGF2-ASQ6U949 168 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 RAPH1Q70E73 1250 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 TAOK1Q7L7X3 1001 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 ADAMTSL2Q86TH1 951 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 TRIM73Q86UV7 250 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 FAM20CQ8IXL6 584 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 KLHDC8AQ8IYD2 350 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 D2HGDHQ8N465 521 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 PPFIBP2Q8ND30 876 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 WDR36Q8NI36 951 aaKnown RBP11.98□□□□□ -0.49
USP40-205ENST00000430158 RHEBL1Q8TAI7 183 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 SMPDL3AQ92484 453 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 GATA6Q92908 595 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 SGPP1Q9BX95 441 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 NMRAL1Q9HBL8 299 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 OCIAD1Q9NX40 245 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms