RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ERI2A8K979 691 aaKnown RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 CD3EAPO15446 510 aaKnown RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 CTSVO60911 334 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 APOA4P06727 396 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 ITGA3P26006 1051 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 KCNJ1P48048 391 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 EIF3BP55884 814 aaKnown RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 VSX2P58304 361 aaPredicted RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 PLOD1Q02809 727 aaPredicted RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 FASTKQ14296 549 aaKnown RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 SIX1Q15475 284 aaPredicted RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 FRMPD2BQ6IN97 320 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 CNSTQ6PJW8 725 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 CUZD1Q86UP6 607 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 DCUN1D3Q8IWE4 304 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 PARP9Q8IXQ6 854 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 IQCKQ8N0W5 287 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 OTUD6BQ8N6M0 293 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 AMER2Q8N7J2 671 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 CCDC89Q8N998 374 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 OR2L8Q8NGY9 312 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 ASZ1Q8WWH4 475 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 C17orf62Q9BQA9 187 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 CHRNA10Q9GZZ6 450 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 P2RY12Q9H244 342 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 CUTCQ9NTM9 273 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 GALPQ9UBC7 116 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 ANAPC5Q9UJX4 755 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 B3GNT3Q9Y2A9 372 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 SNRNP200O75643 2136 aaKnown RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 NBPF19A0A087WUL8 3843 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 LOC105369274A0A096LPK9 316 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 LOC102723532A0A0G2JNH3 316 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 A0A0J9YVX5 310 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 A0A1B0GX78 115 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 TCRBV7S3A2A0A539 114 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 AGPSO00116 658 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 SOCS6O14544 535 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 PRMT5O14744 637 aaPredicted RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 RASGRF2O14827 1237 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 FFAR3O14843 346 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 GPR42O15529 346 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 PRICKLE3O43900 615 aaPredicted RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 KDM1AO60341 852 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 SLCO2B1O94956 709 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 MGAT1P26572 445 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 BASP1P80723 227 aaKnown RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 NKG7Q16617 165 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 PCID2Q5JVF3 399 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 CTSL3PQ5NE16 218 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 ZNF787Q6DD87 383 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 UNC5DQ6UXZ4 953 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 OVCH1Q7RTY7 1134 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 OR4N4Q8N0Y3 316 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 DENND1AQ8TEH3 1009 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 IP6K3Q96PC2 410 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 SPSB2Q99619 263 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 SELENOSQ9BQE4 189 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 TRIM56Q9BRZ2 755 aaKnown RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 ACAT2Q9BWD1 397 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 TSSK1BQ9BXA7 367 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 SLC29A3Q9BZD2 475 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 ATP13A2Q9NQ11 1180 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 SYBUQ9NX95 663 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 PAK5Q9P286 719 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 C5AR2Q9P296 337 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 ERRFI1Q9UJM3 462 aaPredicted RBP11.09□□□□□ -0.63
USP4-204ENST00000416417 RIMKLBQ9ULI2 386 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 HS3ST3B1Q9Y662 390 aa11.09□□□□□ -0.63
USP4-204ENST00000416417 TEX15Q9BXT5 2789 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 DSCR3O14972 297 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 NIPSNAP2O75323 286 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 NDUFS3O75489 264 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 CBX6O95503 412 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 C1orf105O95561 183 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 CLDN1O95832 211 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 S1PR4O95977 384 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 RPN2P04844 631 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 EIF2S1P05198 315 aaKnown RBP11.08□□□□□ -0.64
USP4-204ENST00000416417 ARNTP27540 789 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 FMO4P31512 558 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 TMED2Q15363 201 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 TRIP13Q15645 432 aaPredicted RBP11.08□□□□□ -0.64
USP4-204ENST00000416417 WASHC2DQ5SRD0 308 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 ZADH2Q8N4Q0 377 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 DLG3Q92796 817 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 MFSD3Q96ES6 412 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 SYNPO2LQ9H987 977 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 TREX1Q9NSU2 369 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 IL1RAPL1Q9NZN1 696 aa11.08□□□□□ -0.64
USP4-204ENST00000416417 ZC3H7BQ9UGR2 993 aaKnown RBP11.08□□□□□ -0.64
USP4-204ENST00000416417 COPG1Q9Y678 874 aaKnown RBP11.08□□□□□ -0.64
USP4-204ENST00000416417 A0A1W2PPV9 198 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 F8W8V4 182 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 VAPBO95292 243 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 ALPPP05187 535 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 MMP11P24347 488 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 PPARGP37231 505 aaPredicted RBP11.07□□□□□ -0.64
USP4-204ENST00000416417 TTPAP49638 278 aa11.07□□□□□ -0.64
USP4-204ENST00000416417 ARSFP54793 590 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms