RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 SOX14O95416 240 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TGM3Q08188 693 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 STX4Q12846 297 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 MOGQ16653 247 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 MED27Q6P2C8 311 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SLC24A5Q71RS6 500 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 RBM23Q86U06 439 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TMEM40Q8WWA1 233 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 KIAA1191Q96A73 305 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 ZNF558Q96NG5 402 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TSGA13Q96PP4 275 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 A0A0G2JN53 185 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 H3BMQ9 156 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 HAPLN1P10915 354 aaPredicted RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 HOXA11P31270 313 aaPredicted RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 BCAP31P51572 246 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TPRG1LQ5T0D9 272 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 NEK10Q6ZWH5 1172 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 BEND7Q8N7W2 519 aaPredicted RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 COG8Q96MW5 612 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TVP23BQ9NYZ1 205 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 NUMBLQ9Y6R0 609 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SPACA6W5XKT8 324 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 A0A1B0GVM2 712 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PSIP1O75475 530 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 HLA-DQA2P01906 255 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 RPN2P04844 631 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 MTAPQ13126 283 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SERINC3Q13530 473 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 CLEC12AQ5QGZ9 265 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 DCST1Q5T197 706 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 USP30Q70CQ3 517 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FAM124AQ86V42 546 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 UPF1Q92900 1129 aaKnown RBP eCLIP6.39□□□□□ -1.393e-6■■□□□ 14
SMC1A-202ENST00000375340 SUSD3Q96L08 255 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 MS4A12Q9NXJ0 267 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 CPQQ9Y646 472 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FZD9O00144 591 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 IFNW1P05000 195 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SDC2P34741 201 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 ARSFP54793 590 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 CD83Q01151 205 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SF1Q15637 639 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TYSND1Q2T9J0 566 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 IDNKQ5T6J7 187 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 NUDT18Q6ZVK8 323 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FBXO22Q8NEZ5 403 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TMED9Q9BVK6 235 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TRPV5Q9NQA5 729 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FBXW2Q9UKT8 454 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 USP22Q9UPT9 525 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 IQCMA0A1B0GVH7 501 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PRAMEF11O60813 436 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 GTF2E2P29084 291 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 OR2T5Q6IEZ7 315 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 OOSP2Q86WS3 158 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 OR2T29Q8NH02 315 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 XAGE5Q8WWM1 108 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PIGKQ92643 395 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 CLIP3Q96DZ5 547 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 C8orf48Q96LL4 319 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 DNAJC5Q9H3Z4 198 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SP140LQ9H930 580 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 CMTM6Q9NX76 183 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 THUMPD1Q9NXG2 353 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SYN3O14994 580 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 MAPK8P45983 427 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 CCT3P49368 545 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 IST1P53990 364 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PURAQ00577 322 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 TARDBPQ13148 414 aaKnown RBP eCLIP6.39□□□□□ -1.391e-7■■■■■ 28.6
SMC1A-202ENST00000375340 SPNS2Q8IVW8 549 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SLC15A3Q8IY34 581 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 SLC43A3Q8NBI5 491 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 LEMD2Q8NC56 503 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 C11orf65Q8NCR3 313 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PKP4Q99569 1192 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 AASSQ9UDR5 926 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 CLIC1O00299 241 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 RORCP51449 518 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PSAPL1Q6NUJ1 521 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 METTL25Q8N6Q8 603 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 AQP11Q8NBQ7 271 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 OR10G6Q8NH81 332 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 IMP4Q96G21 291 aaKnown RBP6.39□□□□□ -1.39
SMC1A-202ENST00000375340 BIRC8Q96P09 236 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 OR2AG1Q9H205 316 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 FAM118AQ9NWS6 357 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 RNF6Q9Y252 685 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PCDHB3Q9Y5E6 796 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 MYO10Q9HD67 2058 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 DOCK1Q14185 1865 aa6.39□□□□□ -1.39
SMC1A-202ENST00000375340 PCDH7O60245 1069 aa6.38□□□□□ -1.39
SMC1A-202ENST00000375340 HPGDP15428 266 aa6.38□□□□□ -1.39
SMC1A-202ENST00000375340 CAPN3P20807 821 aa6.38□□□□□ -1.39
SMC1A-202ENST00000375340 MYL9P24844 172 aa6.38□□□□□ -1.39
SMC1A-202ENST00000375340 CAPZA2P47755 286 aa6.38□□□□□ -1.39
SMC1A-202ENST00000375340 ACLYP53396 1101 aa6.38□□□□□ -1.39
SMC1A-202ENST00000375340 ZNF544Q6NX49 715 aa6.38□□□□□ -1.39
SMC1A-202ENST00000375340 TMEM135Q86UB9 458 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms