RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LRRC23Q53EV4 343 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CYBRD1Q53TN4 286 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SPESP1Q6UW49 350 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 TRIM46Q7Z4K8 759 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 METTL3Q86U44 580 aaKnown RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 C2orf73Q8N5S3 287 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 USP7Q93009 1102 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 DCUN1D5Q9BTE7 237 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 RDH14Q9HBH5 336 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 DNAJC11Q9NVH1 559 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CEPT1Q9Y6K0 416 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 E7EQ34 232 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 E2F6O75461 281 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 DIRAS1O95057 198 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF682O95780 498 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 TIMP2P16035 220 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SPIDRQ14159 915 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 MAP7Q14244 749 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 B3GNT6Q6ZMB0 384 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SPRED1Q7Z699 444 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CLVS1Q8IUQ0 354 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 RAVER1Q8IY67 606 aaKnown RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF548Q8NEK5 533 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 NETO1Q8TDF5 533 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SLC47A1Q96FL8 570 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF641Q96N77 438 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 MUS81Q96NY9 551 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 RBM38Q9H0Z9 239 aaKnown RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 OCEL1Q9H607 264 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 NDUFA13Q9P0J0 144 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SNX6Q9UNH7 406 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 ARHGEF33A8MVX0 844 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CFAP99D6REC4 459 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 TMX2-CTNND1H3BSU7 103 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 DEAF1O75398 565 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SERPINA1P01009 418 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 GBAP04062 536 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 IL6P05231 212 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 PTPN2P17706 415 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CAPGP40121 348 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 VIPR2P41587 438 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 TPD52P55327 224 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 VAC14Q08AM6 782 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 TMEM259Q4ZIN3 620 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 ARHGAP15Q53QZ3 475 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 DOK6Q6PKX4 331 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 C12orf40Q86WS4 652 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 MFSD2AQ8NA29 543 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 UBTD2Q8WUN7 234 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 TMEM159Q96B96 161 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 LRRC3BQ96PB8 259 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CPEB1Q9BZB8 566 aaKnown RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 ADNPQ9H2P0 1102 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 DMTF1Q9Y222 760 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 VPS13AQ96RL7 3174 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ELFN1P0C7U0 828 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 RAP2AP10114 183 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 UMPSP11172 480 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CDH2P19022 906 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CD22P20273 847 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 MRPL19P49406 292 aaKnown RBP10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF284Q2VY69 593 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 FRG2Q64ET8 278 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ELMSAN1Q6PJG2 1045 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF621Q6ZSS3 439 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 SYT12Q8IV01 421 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 SFTPA1Q8IWL2 248 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 SGCDQ92629 289 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 AP2M1Q96CW1 435 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ITCHQ96J02 903 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 FRG2BQ96QU4 278 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 DPH2Q9BQC3 489 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-201ENST00000341247 MUC13Q9H3R2 512 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 C11orf49Q9H6J7 331 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 SLC8A2Q9UPR5 921 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 PRKAB1Q9Y478 270 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 A0A0C4DFX4 3053 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CEP290O15078 2479 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 DYTNA2CJ06 578 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 RFXANKO14593 260 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 FOXD2O60548 495 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-201ENST00000341247 C8GP07360 202 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CBSLP0DN79 551 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 MYOGP15173 224 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 SYN1P17600 705 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CEBPBP17676 345 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 MYF6P23409 242 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 VIPR1P32241 457 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CBSP35520 551 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 PFN3P60673 137 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 TMEM220Q6QAJ8 160 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 GPR180Q86V85 440 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 RIMKLAQ8IXN7 391 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CLECL1Q8IZS7 167 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 RASGEF1AQ8N9B8 481 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 OR8J3Q8NGG0 315 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 BPIFB1Q8TDL5 484 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ASZ1Q8WWH4 475 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 NCSTNQ92542 709 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms