RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 RGMAQ96B86 450 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 ZNF304Q9HCX3 659 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 WRAP73Q9P2S5 460 aaPredicted RBP13.27□□□□□ -0.29
SF3A1-201ENST00000215793 AJAP1Q9UKB5 411 aaPredicted RBP13.27□□□□□ -0.29
SF3A1-201ENST00000215793 TBC1D24Q9ULP9 559 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 Q9Y3F1 56 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 ATRNL1Q5VV63 1379 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 SLC22A1O15245 554 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 RENP00797 406 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 HMGCS1Q01581 520 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 KCNJ11Q14654 390 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 ZC3HC1Q86WB0 502 aaKnown RBP13.27□□□□□ -0.29
SF3A1-201ENST00000215793 FAM110BQ8TC76 370 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 FAM210AQ96ND0 272 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 COL21A1Q96P44 957 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 P2RX2Q9UBL9 471 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 A0A0U1RQF3 1178 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 EFCAB9A8MZ26 197 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 SIX3O95343 332 aaPredicted RBP13.27□□□□□ -0.29
SF3A1-201ENST00000215793 RORCP51449 518 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 CASP9P55211 416 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 DSTNP60981 165 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 PLEKHG6Q3KR16 790 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 SIRPB2Q5JXA9 342 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 PRAMEF14Q5SWL7 426 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 PRAMEF13Q5VWM6 474 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 IQCF2Q8IXL9 164 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 CDC14AQ9UNH5 594 aa13.27□□□□□ -0.29
SF3A1-201ENST00000215793 TSPAN9O75954 239 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 CYP11A1P05108 521 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 RB1P06400 928 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 AHCYP23526 432 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 GRIA1P42261 906 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 KLF1Q13351 362 aaPredicted RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 RASSF6Q6ZTQ3 369 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 SATL1Q86VE3 508 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 CAND1Q86VP6 1230 aaKnown RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 GEMIN6Q8WXD5 167 aaKnown RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 PYCR2Q96C36 320 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 PCDHGB1Q9Y5G3 927 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 GOLGA4Q13439 2230 aaKnown RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 CHP2O43745 196 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 GMFGO60234 142 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 MVKQ03426 396 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 TLR1Q15399 786 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 MBLAC2Q68D91 279 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 KCNS3Q9BQ31 491 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 BCO2Q9BYV7 579 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 SMOC2Q9H3U7 446 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 C14orf105Q9NVL8 296 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 GDAP2Q9NXN4 497 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 A0A1W2PRU2 124 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 C9IYK1 514 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 PRKCHP24723 683 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 HOXC12P31275 282 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 CSTF2P33240 577 aaKnown RBP eCLIP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 GJA9P57773 515 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 TCEAL6Q6IPX3 200 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 OR2L5Q8NG80 312 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 SLC35F5Q8WV83 523 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 CMTM7Q96FZ5 175 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 HIST1H2AAQ96QV6 131 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 GPR22Q99680 433 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 IFT46Q9NQC8 304 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 SNTG1Q9NSN8 517 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 MGAT4AQ9UM21 535 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 OR14I1A6ND48 311 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 ARPC2O15144 300 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 XKP51811 444 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 PDX1P52945 283 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 SEC13P55735 322 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 RPP38P78345 283 aaKnown RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 PAFAH1B3Q15102 231 aaKnown RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 TIGD6Q17RP2 521 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 OGFOD2Q6N063 350 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 FRMD7Q6ZUT3 714 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 LGI4Q8N135 537 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 CANT1Q8WVQ1 401 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 TWNKQ96RR1 684 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 LPIN3Q9BQK8 851 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 SLC35A5Q9BS91 424 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 RIOK2Q9BVS4 552 aaKnown RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 RC3H2Q9HBD1 1191 aaKnown RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 GIN1Q9NXP7 522 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 FZD4Q9ULV1 537 aa13.26□□□□□ -0.29
SF3A1-201ENST00000215793 NDRG2Q9UN36 371 aaKnown RBP13.26□□□□□ -0.29
SF3A1-201ENST00000215793 TCRBV7S3A2A0A539 114 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 DLX3O60479 287 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 SEMA3DO95025 777 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 TACSTD2P09758 323 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 MTHFD1P11586 935 aaKnown RBP13.25□□□□□ -0.29
SF3A1-201ENST00000215793 KCNE1P15382 129 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 ZNF30P17039 623 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 CKMT2P17540 419 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 PGDP52209 483 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 GBX2P52951 348 aaPredicted RBP13.25□□□□□ -0.29
SF3A1-201ENST00000215793 TAS2R50P59544 299 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 PRKCZQ05513 592 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 LYSMD3Q7Z3D4 306 aa13.25□□□□□ -0.29
SF3A1-201ENST00000215793 GALNTL5Q7Z4T8 443 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms