RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 INTS6Q9UL03 887 aaKnown RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 ERGIC3Q9Y282 383 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 CHEK2O96017 543 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 MADCAM1Q13477 382 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 BROXQ5VW32 411 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 ARL14EPQ8N8R7 260 aaPredicted RBP10.42□□□□□ -0.74
USP28-201ENST00000003302 OSCP1Q8WVF1 389 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 PROX1Q92786 737 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 FATE1Q969F0 183 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 COX4I2Q96KJ9 171 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 DPY30Q9C005 99 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 MAGEH1Q9H213 219 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 WWOXQ9NZC7 414 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 MAGEL2Q9UJ55 1249 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 SLC22A14Q9Y267 594 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 Q9Y3F1 56 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 OR51B4Q9Y5P0 310 aa10.42□□□□□ -0.74
USP28-201ENST00000003302 KIAA0100Q14667 2235 aaKnown RBP10.41□□□□□ -0.74
USP28-201ENST00000003302 GREM1O60565 184 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 COL6A1P12109 1028 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 HMGCLP35914 325 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 OR1E2P47887 323 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 CREMQ03060 361 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 PCBP2Q15366 365 aaKnown RBP eCLIP10.41□□□□□ -0.74
USP28-201ENST00000003302 IER5LQ5T953 404 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 TMCO5AQ8N6Q1 288 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 PJA1Q8NG27 643 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 MCOLN3Q8TDD5 553 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 SKA2Q8WVK7 121 aaPredicted RBP10.41□□□□□ -0.74
USP28-201ENST00000003302 SCAMP4Q969E2 229 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 MUL1Q969V5 352 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 ASB2Q96Q27 587 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 P2RY13Q9BPV8 354 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 WDR70Q9NW82 654 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 CPQQ9Y646 472 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 ARNTLO00327 626 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 GSTA4O15217 222 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 ULK1O75385 1050 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 GALTP07902 379 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 ACVR2AP27037 513 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 CD97P48960 835 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 EPS8Q12929 822 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 GPR162Q16538 588 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 GPRC6AQ5T6X5 926 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 ZNF691Q5VV52 312 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 SLCO6A1Q86UG4 719 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 MMP21Q8N119 569 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 OR52J3Q8NH60 311 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 APH1BQ8WW43 257 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 FAM193BQ96PV7 902 aaPredicted RBP10.41□□□□□ -0.74
USP28-201ENST00000003302 CPPED1Q9BRF8 314 aaPredicted RBP10.41□□□□□ -0.74
USP28-201ENST00000003302 NUSAP1Q9BXS6 441 aaKnown RBP10.41□□□□□ -0.74
USP28-201ENST00000003302 ZNF334Q9HCZ1 680 aaPredicted RBP10.41□□□□□ -0.74
USP28-201ENST00000003302 COMMD8Q9NX08 183 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 GON4LQ3T8J9 2241 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 WBP4O75554 376 aaKnown RBP10.41□□□□□ -0.74
USP28-201ENST00000003302 NTRK1P04629 796 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 ACLYP53396 1101 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 RHOAP61586 193 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 ZNF420Q8TAQ5 688 aaPredicted RBP10.41□□□□□ -0.74
USP28-201ENST00000003302 BORCS5Q969J3 196 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 TAMM41Q96BW9 452 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 NODALQ96S42 347 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 LRTM1Q9HBL6 345 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 DNMT3LQ9UJW3 386 aa10.41□□□□□ -0.74
USP28-201ENST00000003302 MANBAO00462 879 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 GCM2O75603 506 aaPredicted RBP10.4□□□□□ -0.74
USP28-201ENST00000003302 SPNP16150 400 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 CD70P32970 193 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 KRT20P35900 424 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 LIPAP38571 399 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 TPD52P55327 224 aaPredicted RBP10.4□□□□□ -0.74
USP28-201ENST00000003302 RING1Q06587 406 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 MOGQ16653 247 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 MFSD4AQ8N468 514 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 DNASE1L2Q92874 299 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 TRIM62Q9BVG3 475 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 CD244Q9BZW8 370 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 MTRRQ9UBK8 725 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 NOTCH4Q99466 2003 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.4□□□□□ -0.74
USP28-201ENST00000003302 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.4□□□□□ -0.74
USP28-201ENST00000003302 H0YAE9 185 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 LRRTM2O43300 516 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 UGT2B11O75310 529 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 GSTM2P28161 218 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 CDH4P55283 916 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 ZNF177Q13360 481 aaPredicted RBP10.4□□□□□ -0.74
USP28-201ENST00000003302 IQCCQ4KMZ1 466 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 PDE12Q6L8Q7 609 aaKnown RBP10.4□□□□□ -0.74
USP28-201ENST00000003302 CCDC103Q8IW40 242 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 CHPT1Q8WUD6 406 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 CLSTN3Q9BQT9 956 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 TBC1D23Q9NUY8 699 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 MYO9BQ13459 2157 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 CYP4F2P78329 520 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 GPR153Q6NV75 609 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 GPR149Q86SP6 731 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 PROSER1Q86XN7 944 aa10.4□□□□□ -0.74
USP28-201ENST00000003302 PTOV1Q86YD1 416 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms