RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 RASSF9O75901 435 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 FAM155BO75949 473 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 RHOXF2BP0C7M4 288 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 PVRP15151 417 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 CCNFP41002 786 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 SKIV2L2P42285 1042 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 GABRA4P48169 554 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 FASTKQ14296 549 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 ZNF460Q14592 562 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 TRIM73Q86UV7 250 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 FAM129CQ86XR2 697 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 DTX1Q86Y01 620 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 KMT5CQ86Y97 462 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 LRRC56Q8IYG6 542 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 RBBP8Q99708 897 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 RHOXF2Q9BQY4 288 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 TXLNGYQ9BZA5 131 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 NSMCE4AQ9NXX6 385 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 AKAP7Q9P0M2 348 aaPredicted RBP18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 HEATR5BQ9P2D3 2071 aa18.85■□□□□ 0.61
SHKBP1-221ENST00000599833 SMG1Q96Q15 3661 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 HMX2A2RU54 273 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 GSAPA4D1B5 854 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 SLC9B1P1A6NJY1 282 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 HCRTR1O43613 425 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 SPAG6O75602 509 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 ZBTB11O95625 1053 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 EBLN1P0CF75 366 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 ZNF37AP17032 561 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 CSRP3P50461 194 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 KIR2DS3Q14952 304 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 UGT3A1Q6NUS8 523 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 FAM20CQ8IXL6 584 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 C2orf73Q8N5S3 287 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 OR9A1PQ8NGU1 263 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 SKA2Q8WVK7 121 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 ANKRD49Q8WVL7 239 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 PKP4Q99569 1192 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 GPR22Q99680 433 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 CPNE1Q99829 537 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 CTRCQ99895 268 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 SLC39A1Q9NY26 324 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 SPATA7Q9P0W8 599 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 NFU1Q9UMS0 254 aa18.84■□□□□ 0.61
SHKBP1-221ENST00000599833 H3BMH7 237 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 TIAF1O95411 115 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 MSL3P1P0C860 447 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 MYBL2P10244 700 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 FGF5P12034 268 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 ZNF28P17035 718 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 STX2P32856 288 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 GP5P40197 560 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 PCBP4P57723 403 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 RAB15P59190 212 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 PRKAA1Q13131 559 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 CLN3Q13286 438 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 ZKSCAN8Q15776 578 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 SLC5A12Q1EHB4 618 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 ZXDCQ2QGD7 858 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 LINGO1Q96FE5 620 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 PDLIM5Q96HC4 596 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 ELMO2Q96JJ3 720 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 FOPNLQ96NB1 174 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 CHRNA10Q9GZZ6 450 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 CAB39LQ9H9S4 337 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 FAM60AQ9NP50 221 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 MTRF1LQ9UGC7 380 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 FER1L5A0AVI2 2057 aa18.83■□□□□ 0.6
SHKBP1-221ENST00000599833 CACNA1BQ00975 2339 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 DLGAP3O95886 979 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 CATP04040 527 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 FAM153BP0C7A2 387 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 PSMB5P28074 263 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 YBX1P67809 324 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 HSD11B2P80365 405 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 PHKG1Q16816 387 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 FAM153CQ494X1 144 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 ARMC6Q6NXE6 501 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 ZFAND4Q86XD8 727 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 IFT20Q8IY31 132 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 PPM1NQ8N819 430 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 OR2A1Q8NGT9 310 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 ZNF480Q8WV37 535 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 ZNF501Q96CX3 271 aaPredicted RBP18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 OR6C1Q96RD1 312 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 SLC12A9Q9BXP2 914 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 KLHL25Q9H0H3 589 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 EPB41L4BQ9H329 900 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 ACSS3Q9H6R3 686 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 PDE10AQ9Y233 779 aa18.82■□□□□ 0.6
SHKBP1-221ENST00000599833 A0A0J9YY10 115 aa18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 SLC16A8O95907 504 aa18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 CDH3P22223 829 aa18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 IMPA1P29218 277 aa18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 PDAP1Q13442 181 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 NAB1Q13506 487 aa18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 TGIF1Q15583 401 aa18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 PPP1R3AQ16821 1122 aa18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 DCAF12Q5T6F0 453 aa18.81■□□□□ 0.6
SHKBP1-221ENST00000599833 LRRC8EQ6NSJ5 796 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms