RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 CLCN7P51798 805 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 MPP1Q00013 466 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 C19orf57Q0VDD7 668 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 GPS2Q13227 327 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 TTLL9Q3SXZ7 439 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 CCSMST1Q4G0I0 132 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 SPANXN3Q5MJ09 141 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 ZNF549Q6P9A3 640 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 FAM199XQ6PEV8 388 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-206ENST00000579558 BORAQ6PGQ7 559 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 FAM20CQ8IXL6 584 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 PDIK1LQ8N165 341 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 EXD3Q8N9H8 876 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 MAGEC3Q8TD91 643 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 MR1Q95460 341 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 CLIP3Q96DZ5 547 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 KRT12Q99456 494 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 TRIM31Q9BZY9 425 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 AKIRIN1Q9H9L7 192 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-206ENST00000579558 SNRNP200O75643 2136 aaKnown RBP23.05■■□□□ 1.28
SHMT1-206ENST00000579558 SPTBP11277 2137 aa23.05■■□□□ 1.28
SHMT1-206ENST00000579558 C21orf140B9A014 251 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 E7EQ34 232 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 SMAPO00193 183 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 MATN4O95460 622 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 FAM87AP0C7U9 286 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 ERVK-10P10266 1014 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 OAS2P29728 719 aaKnown RBP23.04■■□□□ 1.28
SHMT1-206ENST00000579558 ITGA8P53708 1063 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 KLHL38Q2WGJ6 581 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 DEFB110Q30KQ9 67 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 CRTC2Q53ET0 693 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-206ENST00000579558 HIBCHQ6NVY1 386 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-206ENST00000579558 ZNF843Q8N446 348 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 SLC38A9Q8NBW4 561 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 GABPB2Q8TAK5 448 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-206ENST00000579558 KCNJ9Q92806 393 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 SNF8Q96H20 258 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 PWWP2AQ96N64 755 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 LRFN5Q96NI6 719 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 SLC30A3Q99726 388 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 SLC7A5P2Q9GIP4 190 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 CHRNA10Q9GZZ6 450 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 ACTR5Q9H9F9 607 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-206ENST00000579558 CAMSAP3Q9P1Y5 1249 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-206ENST00000579558 PCDHGA6Q9Y5G7 932 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 COMMD10Q9Y6G5 202 aa23.04■■□□□ 1.28
SHMT1-206ENST00000579558 KRT87PA6NCN2 255 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 HAUS5O94927 633 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 KLK3P07288 261 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-206ENST00000579558 MAGP20916 626 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 CASQ1P31415 396 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 ATP1A1-AS1Q5TC04 95 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 IGDCC3Q8IVU1 814 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 GPR135Q8IZ08 494 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 GIMAP7Q8NHV1 300 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 SPATA7Q9P0W8 599 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 KLHL42Q9P2K6 505 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 KLHL20Q9Y2M5 609 aa23.03■■□□□ 1.28
SHMT1-206ENST00000579558 EFCAB8A8MWE9 144 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 SEC31AO94979 1220 aaKnown RBP23.02■■□□□ 1.28
SHMT1-206ENST00000579558 ELK3P41970 407 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 GABRA4P48169 554 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 CUL1Q13616 776 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 SF1Q15637 639 aaKnown RBP23.02■■□□□ 1.28
SHMT1-206ENST00000579558 HIF1AQ16665 826 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 HP1BP3Q5SSJ5 553 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-206ENST00000579558 DSELQ8IZU8 1212 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 C2CD4AQ8NCU7 369 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-206ENST00000579558 CFAP36Q96G28 342 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 RUFY1Q96T51 708 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 CHMP2BQ9UQN3 213 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 MED16Q9Y2X0 877 aa23.02■■□□□ 1.28
SHMT1-206ENST00000579558 ARHGEF33A8MVX0 844 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 MEN1O00255 615 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 ZNF749O43361 778 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 HCRTR1O43613 425 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 CREG1O75629 220 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 OR2B3O76000 313 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 CATP04040 527 aaKnown RBP23.01■■□□□ 1.27
SHMT1-206ENST00000579558 RORAP35398 523 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 CCR10P46092 362 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 ARL4CP56559 192 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 RPS15P62841 145 aaKnown RBP23.01■■□□□ 1.27
SHMT1-206ENST00000579558 ERV3-1Q14264 604 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 DEFB109BQ30KR1 87 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 NEK10Q6ZWH5 1172 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 DNAJC22Q8N4W6 341 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 DENND1AQ8TEH3 1009 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 CERS2Q96G23 380 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 GPR21Q99679 349 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 AARSD1Q9BTE6 412 aaKnown RBP23.01■■□□□ 1.27
SHMT1-206ENST00000579558 GPR87Q9BY21 358 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 CHST8Q9H2A9 424 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 ACTL8Q9H568 366 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 FAM114A2Q9NRY5 505 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 PCMTD2Q9NV79 361 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 INTS7Q9NVH2 962 aaKnown RBP23.01■■□□□ 1.27
SHMT1-206ENST00000579558 ZC3H7BQ9UGR2 993 aaKnown RBP23.01■■□□□ 1.27
SHMT1-206ENST00000579558 DHRS7Q9Y394 339 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms