RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 EFCAB7A8K855 629 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 PRICKLE3O43900 615 aaPredicted RBP18.9■□□□□ 0.62
CLN3-225ENST00000566824 SYF2O95926 243 aaKnown RBP18.9■□□□□ 0.62
CLN3-225ENST00000566824 ST6GAL1P15907 406 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 PSMB5P28074 263 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 CSRP3P50461 194 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 MAPK10P53779 464 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 DLG1Q12959 904 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 PRKAA1Q13131 559 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 TTC23LQ6PF05 361 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 FBXO15Q8NCQ5 510 aaPredicted RBP18.9■□□□□ 0.62
CLN3-225ENST00000566824 PPFIBP2Q8ND30 876 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 AGBL5Q8NDL9 886 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 PDLIM5Q96HC4 596 aaKnown RBP18.9■□□□□ 0.62
CLN3-225ENST00000566824 PARD6BQ9BYG5 372 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 POPDC3Q9HBV1 291 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 ASCL3Q9NQ33 180 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 SIDT1Q9NXL6 827 aaKnown RBP18.9■□□□□ 0.62
CLN3-225ENST00000566824 KLHL20Q9Y2M5 609 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 SPTBP11277 2137 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 FREM2Q5SZK8 3169 aa18.9■□□□□ 0.62
CLN3-225ENST00000566824 C2orf74A8MZ97 194 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 ISM1B1AKI9 464 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 TNFSF15O95150 251 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 SLC16A8O95907 504 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 SHBGP04278 402 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 SLC35E2BP0CK96 405 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 ERGP11308 486 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 STMN1P16949 149 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 CSTF2P33240 577 aaKnown RBP eCLIP18.89■□□□□ 0.61
CLN3-225ENST00000566824 SLC12A2P55011 1212 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 RAB10P61026 200 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 ZIC1Q15915 447 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 CYP2A13Q16696 494 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 ZXDCQ2QGD7 858 aaPredicted RBP18.89■□□□□ 0.61
CLN3-225ENST00000566824 WDR93Q6P2C0 686 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 SPESP1Q6UW49 350 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 SBSNQ6UWP8 590 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 UNQ6494/PRO21346Q6UXR6 183 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 FAM129CQ86XR2 697 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 AENQ8WTP8 325 aaKnown RBP18.89■□□□□ 0.61
CLN3-225ENST00000566824 ZNF480Q8WV37 535 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 NXPE2Q96DL1 559 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 TSPAN17Q96FV3 270 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 SLC41A2Q96JW4 573 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 SLC46A1Q96NT5 459 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 CMKLR1Q99788 373 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 DHRS4Q9BTZ2 278 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 SLC12A9Q9BXP2 914 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 PITPNM3Q9BZ71 974 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 APMAPQ9HDC9 416 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 PCDHGA8Q9Y5G5 932 aa18.89■□□□□ 0.61
CLN3-225ENST00000566824 TOX3O15405 576 aaPredicted RBP18.88■□□□□ 0.61
CLN3-225ENST00000566824 ZBTB14O43829 449 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 ALDOAP04075 364 aaKnown RBP18.88■□□□□ 0.61
CLN3-225ENST00000566824 C8GP07360 202 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 CCDC166P0CW27 439 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 NELFEP18615 380 aaKnown RBP18.88■□□□□ 0.61
CLN3-225ENST00000566824 CDH3P22223 829 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 IMPA1P29218 277 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 TUBB4BP68371 445 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 IRF9Q00978 393 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 TSNQ15631 228 aaKnown RBP18.88■□□□□ 0.61
CLN3-225ENST00000566824 ANKS6Q68DC2 871 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 LRRC8EQ6NSJ5 796 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 SUSD1Q6UWL2 747 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 LRRC56Q8IYG6 542 aaPredicted RBP18.88■□□□□ 0.61
CLN3-225ENST00000566824 NKAPQ8N5F7 415 aaKnown RBP18.88■□□□□ 0.61
CLN3-225ENST00000566824 MAGEC3Q8TD91 643 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 USP7Q93009 1102 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 TRAPPC9Q96Q05 1148 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 CD180Q99467 661 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 CTRCQ99895 268 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 PARVBQ9HBI1 364 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 SYTL2Q9HCH5 934 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 SPATA7Q9P0W8 599 aa18.88■□□□□ 0.61
CLN3-225ENST00000566824 SDK2Q58EX2 2172 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 ACACAQ13085 2346 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 EXOC1LA0A1B0GW35 172 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 C9orf172C9J069 976 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 SLC16A5O15375 505 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 INHBAP08476 426 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 JMJD7P0C870 316 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 EBLN1P0CF75 366 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 FOLR1P15328 257 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 MAP4P27816 1152 aaKnown RBP18.87■□□□□ 0.61
CLN3-225ENST00000566824 MSH2P43246 934 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 PNLIPRP1P54315 467 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 EIF3IQ13347 325 aaKnown RBP18.87■□□□□ 0.61
CLN3-225ENST00000566824 KIR2DS3Q14952 304 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 PPP1R3AQ16821 1122 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 HMGCLL1Q8TB92 370 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 UBLCP1Q8WVY7 318 aaPredicted RBP18.87■□□□□ 0.61
CLN3-225ENST00000566824 UBXN10Q96LJ8 280 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 SNX15Q9NRS6 342 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 UTP6Q9NYH9 597 aaKnown RBP18.87■□□□□ 0.61
CLN3-225ENST00000566824 FOXJ2Q9P0K8 574 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 STOX2Q9P2F5 926 aaPredicted RBP18.87■□□□□ 0.61
CLN3-225ENST00000566824 HEATR5BQ9P2D3 2071 aa18.87■□□□□ 0.61
CLN3-225ENST00000566824 CDRT15L2A8MXV6 281 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms