RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NMRK2Q9NPI5 230 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 TMEM9Q9P0T7 183 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CRLS1Q9UJA2 301 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 GNPTGQ9UJJ9 305 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 BAG5Q9UL15 447 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ABCG2Q9UNQ0 655 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 DENND4CQ5VZ89 1909 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 IFRD1O00458 451 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CLPXO76031 633 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF682O95780 498 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 TRBC1P01850 177 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 IL6P05231 212 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 OCM2P0CE71 109 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 OCMP0CE72 109 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 EPB42P16452 691 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 PCMT1P22061 227 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 EPHA2P29317 976 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 PTPN6P29350 595 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 MAP2K4P45985 399 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 NRIP1P48552 1158 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 RGS4P49798 205 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 RPS14P62263 151 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 SMAD3P84022 425 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 IL5RAQ01344 420 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CD300CQ08708 224 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ITGADQ13349 1161 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 SF1Q15637 639 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CDKN3Q16667 212 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CACHD1Q5VU97 1274 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ZNF691Q5VV52 312 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CRTC3Q6UUV7 619 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 LRRC8DQ7L1W4 858 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 TRIM46Q7Z4K8 759 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 SNX20Q7Z614 316 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 GPR149Q86SP6 731 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 IGFN1Q86VF2 1251 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 PLPP6Q8IY26 295 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 RBFAQ8N0V3 343 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 TERB1Q8NA31 727 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 GPR26Q8NDV2 337 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ABHD11Q8NFV4 315 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 USP7Q93009 1102 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 FAM120BQ96EK7 910 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ALG14Q96F25 216 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 COX4I2Q96KJ9 171 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CNDP2Q96KP4 475 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 RBM4BQ9BQ04 359 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CPPED1Q9BRF8 314 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 RBM4Q9BWF3 364 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ALOXE3Q9BYJ1 711 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 GPN2Q9H9Y4 310 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 TMEM45AQ9NWC5 275 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 C1orf109Q9NX04 203 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CHCHD3Q9NX63 227 aaKnown RBP7.32□□□□□ -1.24
LIMA1-213ENST00000552720 TRPM5Q9NZQ8 1165 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 ERVK-11Q9UQG0 969 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 COQ6Q9Y2Z9 468 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 OR51B4Q9Y5P0 310 aa7.32□□□□□ -1.24
LIMA1-213ENST00000552720 CHD7Q9P2D1 2997 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 GLYATL1P3A0A0U1RQE8 302 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 FUOMA2VDF0 154 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 NPIPB15A6NHN6 443 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-213ENST00000552720 hCG_2039718K7EN88 272 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 SLC28A1O00337 649 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 PER2O15055 1255 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 PRAMEF4O60810 478 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 STK16O75716 305 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 SCELO95171 688 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 SLC10A3P09131 477 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 MSH3P20585 1137 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 ITGALP20701 1170 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 EMX1Q04741 257 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-213ENST00000552720 FPGSQ05932 587 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 CDK5R2Q13319 367 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 GTF2H3Q13889 308 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 CTF1Q16619 201 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 SMN1Q16637 294 aaKnown RBP7.31□□□□□ -1.24
LIMA1-213ENST00000552720 CYP2A13Q16696 494 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 PRAMEF9Q5VWM5 478 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 CERS6Q6ZMG9 384 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 FAM43BQ6ZT52 329 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-213ENST00000552720 RNF180Q86T96 592 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 CALHM3Q86XJ0 350 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 EID3Q8N140 333 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 OR5K1Q8NHB7 308 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 ADAMTS19Q8TE59 1207 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 UBE2FQ969M7 185 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 MUL1Q969V5 352 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 APIPQ96GX9 242 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 NODALQ96S42 347 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 NTMT1Q9BV86 223 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 EBPLQ9BY08 206 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 RAD21L1Q9H4I0 556 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 RIBC2Q9H4K1 309 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 PARVBQ9HBI1 364 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 PCDH12Q9NPG4 1184 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 ARL15Q9NXU5 204 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 USE1Q9NZ43 259 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 ERVK-18Q9QC07 812 aa7.31□□□□□ -1.24
LIMA1-213ENST00000552720 LRFN2Q9ULH4 789 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms