RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CDH20Q9HBT6 801 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 A4GALTQ9NPC4 353 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 CD93Q9NPY3 652 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 GKN1Q9NS71 199 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 DDX43Q9NXZ2 648 aaKnown RBP3.85□□□□□ -1.79
VPS29-205ENST00000548539 LRWD1Q9UFC0 647 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 DAPK2Q9UIK4 370 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 SNX7Q9UNH6 387 aa3.85□□□□□ -1.79
VPS29-205ENST00000548539 IGLV5-45A0A087WSX0 123 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 A0A1W2PPI3 338 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 A4D1N5 150 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 C16orf97H3BN30 126 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 ACOT8O14734 319 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 MOCS3O95396 460 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 GSRP00390 522 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 CSN3P07498 182 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 SNRNP70P08621 437 aaKnown RBP3.84□□□□□ -1.79
VPS29-205ENST00000548539 HSPA8P11142 646 aaKnown RBP3.84□□□□□ -1.79
VPS29-205ENST00000548539 ADRA2CP18825 462 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 GNAZP19086 355 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 NR1D1P20393 614 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 MSH3P20585 1137 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 MNDAP41218 407 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 KCNJ1P48048 391 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 MAT1AQ00266 395 aaKnown RBP3.84□□□□□ -1.79
VPS29-205ENST00000548539 YWHAHQ04917 246 aaPredicted RBP3.84□□□□□ -1.79
VPS29-205ENST00000548539 KIR2DS3Q14952 304 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 CA9Q16790 459 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 MCMDC2Q4G0Z9 681 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 SFMBT2Q5VUG0 894 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 SHEQ5VZ18 495 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 C11orf63Q6NUN7 778 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 ENPP7Q6UWV6 458 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 TMEM182Q6ZP80 229 aaPredicted RBP3.84□□□□□ -1.79
VPS29-205ENST00000548539 OTOAQ7RTW8 1153 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 KLHL7Q8IXQ5 586 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 CCDC170Q8IYT3 715 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 CDK20Q8IZL9 346 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.84□□□□□ -1.79
VPS29-205ENST00000548539 POC1AQ8NBT0 407 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 OCC1Q8TAD7 63 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 OLIG1Q8TAK6 271 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 ZNF473Q8WTR7 871 aaKnown RBP3.84□□□□□ -1.79
VPS29-205ENST00000548539 CCDC107Q8WV48 283 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 CD101Q93033 1021 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 DHX58Q96C10 678 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 SGK494Q96LW2 274 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 SPATA33Q96N06 139 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 DUX5Q96PT3 197 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 RTP3Q9BQQ7 232 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 LRRC1Q9BTT6 524 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 COPS7BQ9H9Q2 264 aaPredicted RBP3.84□□□□□ -1.79
VPS29-205ENST00000548539 FKRPQ9H9S5 495 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 DNAJC4Q9NNZ3 241 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 TCF7L2Q9NQB0 619 aa3.84□□□□□ -1.79
VPS29-205ENST00000548539 A0A087WV48 116 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 A0A0U1RQK1 487 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 A0A1W2PPK0 400 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 ZNF320A2RRD8 509 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 SMTNL1A8MU46 457 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 PRR32B1ATL7 298 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 NTN3O00634 580 aaPredicted RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 IGHV4-39P01824 125 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 NR3C1P04150 777 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 VIMP08670 466 aaKnown RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 PLA2G4BP0C869 781 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 SAGP10523 405 aaPredicted RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 LBPP18428 481 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 DGKAP23743 735 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 SLC6A6P31641 620 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 WNT5AP41221 380 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 GSDMDP57764 484 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 PTENP60484 403 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 TUBB4BP68371 445 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 PITX1P78337 314 aaPredicted RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 LRRC73Q5JTD7 316 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 SPDYCQ5MJ68 293 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 LINGO4Q6UY18 593 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 PIWIL3Q7Z3Z3 882 aaKnown RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 DZIP1Q86YF9 867 aaKnown RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 MAB21L3Q8N8X9 362 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 SLC24A4Q8NFF2 622 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 OR2T12Q8NG77 320 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 OR1J1Q8NGS3 322 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 GRAPLQ8TC17 118 aaPredicted RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 PROX1Q92786 737 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 BSCL2Q96G97 398 aaPredicted RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 INPP5KQ9BT40 448 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 PRRG4Q9BZD6 226 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 RSPH9Q9H1X1 276 aaPredicted RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 ARGLU1Q9NWB6 273 aaPredicted RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 TAAR2Q9P1P5 351 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 CACNG4Q9UBN1 327 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 ARMCX3Q9UH62 379 aaPredicted RBP3.83□□□□□ -1.8
VPS29-205ENST00000548539 SLC7A7Q9UM01 511 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 WDR83OSQ9Y284 106 aa3.83□□□□□ -1.8
VPS29-205ENST00000548539 A0A1W2PS18 150 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 DNM1LO00429 736 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 ST8SIA3O43173 380 aa3.82□□□□□ -1.8
VPS29-205ENST00000548539 GRID2O43424 1007 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms