RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 FAM8A1Q9UBU6 413 aa13.08□□□□□ -0.32
PTCH1-215ENST00000547672 KLQ9UEF7 1012 aa13.08□□□□□ -0.32
PTCH1-215ENST00000547672 SERGEFQ9UGK8 458 aa13.08□□□□□ -0.32
PTCH1-215ENST00000547672 COLQQ9Y215 455 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-215ENST00000547672 SLC22A14Q9Y267 594 aa13.08□□□□□ -0.32
PTCH1-215ENST00000547672 ASF1AQ9Y294 204 aa13.08□□□□□ -0.32
PTCH1-215ENST00000547672 SLC17A4Q9Y2C5 497 aa13.08□□□□□ -0.32
PTCH1-215ENST00000547672 GPR45Q9Y5Y3 372 aa13.08□□□□□ -0.32
PTCH1-215ENST00000547672 HS3ST3A1Q9Y663 406 aa13.08□□□□□ -0.32
PTCH1-215ENST00000547672 FAM234BA2RU67 622 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 TMEM202A6NGA9 273 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 NPIPB8E9PQR5 432 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 STAMBPO95630 424 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 PRPS2P11908 318 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 SLC2A4P14672 509 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 HNRNPA2B1P22626 353 aaKnown RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 PDHA2P29803 388 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 PRDX3P30048 256 aaKnown RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 CCR5P51681 352 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 PFN3P60673 137 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 PHEXP78562 749 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 CTBSQ01459 385 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 TBL3Q12788 808 aaKnown RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 CSTF3Q12996 717 aaKnown RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 PRKG2Q13237 762 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 GRB7Q14451 532 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 AP5B1Q2VPB7 878 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 C18orf21Q32NC0 220 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 FBXW10Q5XX13 1052 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 PTCRAQ6ISU1 281 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 DOK6Q6PKX4 331 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 BNC2Q6ZN30 1099 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 SYT13Q7L8C5 426 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 SYTL1Q8IYJ3 562 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 ULK2Q8IYT8 1036 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 TBC1D21Q8IYX1 336 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 DEFB107AQ8IZN7 70 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 DSELQ8IZU8 1212 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 PGBD3Q8N328 593 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 FBXW8Q8N3Y1 598 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 DNAJB8Q8NHS0 232 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 SELENOMQ8WWX9 145 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 JADE3Q92613 823 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 UTP4Q969X6 686 aaKnown RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 CMTM7Q96FZ5 175 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 FAM161BQ96MY7 647 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 CDK15Q96Q40 435 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 UHRF1Q96T88 793 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-215ENST00000547672 EFCAB11Q9BUY7 163 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 ZMYND15Q9H091 742 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 OR52A5Q9H2C5 316 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 CD248Q9HCU0 757 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 C1orf109Q9NX04 203 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 ADGRE2Q9UHX3 823 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 DMTF1Q9Y222 760 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 RNF11Q9Y3C5 154 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 ASB1Q9Y576 335 aa13.07□□□□□ -0.32
PTCH1-215ENST00000547672 ANKRD12Q6UB98 2062 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 TCRBV21S2A2A0A5A6 115 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 PRR23AA6NEV1 266 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 H0YIV9 168 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 FKBP6O75344 327 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 ZNF217O75362 1048 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 SEC22BO75396 215 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 RSL1D1O76021 490 aaKnown RBP13.06□□□□□ -0.32
PTCH1-215ENST00000547672 MYO1DO94832 1006 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 SLC16A8O95907 504 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 IGLV3-19P01714 112 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 ITGAXP20702 1163 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 COL9A1P20849 921 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 PRPH2P23942 346 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 CXCR2P25025 360 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 NDUFS1P28331 727 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 TPMTP51580 245 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 CLCNKAP51800 687 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 SLC25A3Q00325 362 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 FOXM1Q08050 763 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 CHIT1Q13231 466 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 LRP8Q14114 963 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 KRT33BQ14525 404 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 ABRAXAS2Q15018 415 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 CCDC85BQ15834 202 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-215ENST00000547672 CPSF6Q16630 551 aaKnown RBP eCLIP13.06□□□□□ -0.32
PTCH1-215ENST00000547672 XKR6Q5GH73 641 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 FRG2Q64ET8 278 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 BLOC1S3Q6QNY0 202 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 Q6ZSR9 355 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 C11orf96Q7Z7L8 435 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 ZFAND4Q86XD8 727 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 CACUL1Q86Y37 369 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 STARD8Q92502 1023 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 RCN3Q96D15 328 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 MED8Q96G25 268 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 SCARF2Q96GP6 870 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-215ENST00000547672 FRG2BQ96QU4 278 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 PITHD1Q9GZP4 211 aaPredicted RBP13.06□□□□□ -0.32
PTCH1-215ENST00000547672 ATG10Q9H0Y0 220 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 MVB12BQ9H7P6 319 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 WDR41Q9HAD4 459 aa13.06□□□□□ -0.32
PTCH1-215ENST00000547672 BRF2Q9HAW0 419 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms