RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CRIM1Q9NZV1 1036 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 CTSFQ9UBX1 484 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 AMACRQ9UHK6 382 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 NBEAL1Q6ZS30 2694 aa8.75□□□□□ -1.01
USP28-205ENST00000537706 RCCD1A6NED2 376 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 FAM47E-STBD1D6RA91 191 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 PRMT3O60678 531 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 ITGAMP11215 1152 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 EMP2P54851 167 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 DSC2Q02487 901 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 FAM214AQ32MH5 1076 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 ATP13A4Q4VNC1 1196 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 KHDC1Q4VXA5 237 aaKnown RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 ZDHHC20Q5W0Z9 365 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 KDELC1Q6UW63 502 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 COX15Q7KZN9 410 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 NOP9Q86U38 636 aaKnown RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 PRSS58Q8IYP2 241 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 CIARTQ8N365 385 aaPredicted RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 TEX26Q8N6G2 289 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 POGLUT1Q8NBL1 392 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 SCMH1Q96GD3 660 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 MVB12BQ9H7P6 319 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 EURLQ9NYK6 297 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP28-205ENST00000537706 IGHV1-45A0A0A0MS14 117 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 OR2AG2A6NM03 316 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 A8MUI8 341 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 TFECO14948 347 aaPredicted RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 SIX3O95343 332 aaPredicted RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 PRLP01236 227 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 ZGLP1P0C6A0 271 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 MSH3P20585 1137 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 UQCRC1P31930 480 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 GABRA4P48169 554 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 DLX5P56178 289 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 NUP107P57740 925 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 TPM4P67936 248 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 OC90Q02509 493 aaPredicted RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 DAZAP2Q15038 168 aaPredicted RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 TCTE1Q5JU00 501 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 FKBP15Q5T1M5 1219 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 GPRC6AQ5T6X5 926 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 CCDC70Q6NSX1 233 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 PAOXQ6QHF9 649 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 TMC3Q7Z5M5 1100 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 PSTKQ8IV42 348 aaKnown RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 MCATQ8IVS2 390 aaKnown RBP8.74□□□□□ -1.01
USP28-205ENST00000537706 DNAJC22Q8N4W6 341 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 SLC30A5Q8TAD4 765 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 STT3BQ8TCJ2 826 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 ZNF653Q96CK0 615 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 MCEEQ96PE7 176 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 TUBB6Q9BUF5 446 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 CTNND2Q9UQB3 1225 aa8.74□□□□□ -1.01
USP28-205ENST00000537706 HIVEP2P31629 2446 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 A0A1B0GTH9 108 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 PRPF4O43172 522 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP28-205ENST00000537706 PHF1O43189 567 aaPredicted RBP8.73□□□□□ -1.01
USP28-205ENST00000537706 KDM1AO60341 852 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 CDC40O60508 579 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP28-205ENST00000537706 CYP1A1P04798 512 aaPredicted RBP8.73□□□□□ -1.01
USP28-205ENST00000537706 POLBP06746 335 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 HEXBP07686 556 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 UGT2B7P16662 529 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 CD53P19397 219 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 AKT1P31749 480 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 TUBA3CQ13748 450 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 CA9Q16790 459 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 MEP1AQ16819 746 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 FILIP1LQ4L180 1135 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 ALG1LQ6GMV1 187 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 SLC25A25Q6KCM7 469 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 TUBA3EQ6PEY2 450 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 GALNTL5Q7Z4T8 443 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 YTHDF3Q7Z739 585 aaKnown RBP8.73□□□□□ -1.01
USP28-205ENST00000537706 TRIM73Q86UV7 250 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 BEST3Q8N1M1 668 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 RASGEF1AQ8N9B8 481 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 SPC24Q8NBT2 197 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 MDS2Q8NDY4 140 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 OR52E1Q8NGJ3 308 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 OR2L2Q8NH16 312 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 RMDN2Q96LZ7 410 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 OLFM1Q99784 485 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 SNRNP25Q9BV90 132 aaKnown RBP8.73□□□□□ -1.01
USP28-205ENST00000537706 MAGEE1Q9HCI5 957 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 ZNF304Q9HCX3 659 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 FAM8A1Q9UBU6 413 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 SHOC2Q9UQ13 582 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 ZNF711Q9Y462 761 aa8.73□□□□□ -1.01
USP28-205ENST00000537706 FLNAP21333 2647 aaKnown RBP8.73□□□□□ -1.01
USP28-205ENST00000537706 NSD1Q96L73 2696 aaPredicted RBP8.73□□□□□ -1.01
USP28-205ENST00000537706 A0A1W2PQ72 361 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 HYKKA2RU49 373 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 SMTNL1A8MU46 457 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 BIN1O00499 593 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 ZNHIT1O43257 154 aa8.72□□□□□ -1.01
USP28-205ENST00000537706 RNF8O76064 485 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms