RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SERTAD3Q9UJW9 196 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 KCND3Q9UK17 655 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 MED16Q9Y2X0 877 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.27□□□□□ -0.13
USP28-204ENST00000537642 PCM1Q15154 2024 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 CFAP46Q8IYW2 2715 aa14.27□□□□□ -0.13
USP28-204ENST00000537642 C21orf140B9A014 251 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 E5RI56 91 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 H3BMH7 237 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 TTI1O43156 1089 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 PRICKLE3O43900 615 aaPredicted RBP14.26□□□□□ -0.13
USP28-204ENST00000537642 MATN4O95460 622 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 FURINP09958 794 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 CYP2A7P20853 494 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 RORAP35398 523 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 PAFAH1B1P43034 410 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 MPP1Q00013 466 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 DR1Q01658 176 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 MORF4L2Q15014 288 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 DEFB110Q30KQ9 67 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 HSP90AA5PQ58FG0 334 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 LCN10Q6JVE6 187 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 TTC23LQ6PF05 361 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 KCNMB4Q86W47 210 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 LMNTD2Q8IXW0 634 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 DSELQ8IZU8 1212 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 GIMAP7Q8NHV1 300 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 CALML6Q8TD86 181 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 DENND1AQ8TEH3 1009 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 MR1Q95460 341 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 PWWP2AQ96N64 755 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 FOPNLQ96NB1 174 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 EBNA1BP2Q99848 306 aaKnown RBP14.26□□□□□ -0.13
USP28-204ENST00000537642 TRIM51Q9BSJ1 452 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 CHST8Q9H2A9 424 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 ACTR5Q9H9F9 607 aaPredicted RBP14.26□□□□□ -0.13
USP28-204ENST00000537642 IARS2Q9NSE4 1012 aaKnown RBP14.26□□□□□ -0.13
USP28-204ENST00000537642 PCMTD2Q9NV79 361 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 FBXO5Q9UKT4 447 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 SLC39A10Q9ULF5 831 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 KLHL20Q9Y2M5 609 aa14.26□□□□□ -0.13
USP28-204ENST00000537642 BOD1L1Q8NFC6 3051 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 E7EQ34 232 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 CCDC188H7C350 402 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 MEN1O00255 615 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 ZNF749O43361 778 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 CREG1O75629 220 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 HAUS5O94927 633 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 CTSBP07858 339 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 ERVK-10P10266 1014 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 MAGP20916 626 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 CCNFP41002 786 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 POLE2P56282 527 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 RPS18P62269 152 aaKnown RBP14.25□□□□□ -0.13
USP28-204ENST00000537642 ERV3-1Q14264 604 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 KLHL38Q2WGJ6 581 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 DEFB109BQ30KR1 87 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 BBS9Q3SYG4 887 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 HIBCHQ6NVY1 386 aaPredicted RBP14.25□□□□□ -0.13
USP28-204ENST00000537642 C17orf53Q8N3J3 647 aaPredicted RBP14.25□□□□□ -0.13
USP28-204ENST00000537642 DNAJC22Q8N4W6 341 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 SLC22A18Q96BI1 424 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 CLIP3Q96DZ5 547 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 FAM167BQ9BTA0 163 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 RAB11FIP5Q9BXF6 653 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 GPR87Q9BY21 358 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 SPRTNQ9H040 489 aaPredicted RBP14.25□□□□□ -0.13
USP28-204ENST00000537642 CCDC68Q9H2F9 335 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 ACTL8Q9H568 366 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 PLAC1Q9HBJ0 212 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 KLHL42Q9P2K6 505 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 RNF14Q9UBS8 474 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 MRFAP1Q9Y605 127 aa14.25□□□□□ -0.13
USP28-204ENST00000537642 TLN1Q9Y490 2541 aaKnown RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 ARHGEF33A8MVX0 844 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 TP73O15350 636 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 PSIP1O75475 530 aaKnown RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 TTC4O95801 387 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 KLK3P07288 261 aaPredicted RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 PTPN4P29074 926 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 CCR10P46092 362 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 ITGA8P53708 1063 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 SPANXN3Q5MJ09 141 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 GPR135Q8IZ08 494 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 C2CD4AQ8NCU7 369 aaPredicted RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 HMGCLL1Q8TB92 370 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 MAGEC3Q8TD91 643 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 N4BP2L2Q92802 583 aaPredicted RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 KCNJ9Q92806 393 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 KRT12Q99456 494 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 GPR21Q99679 349 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 WDR83Q9BRX9 315 aaKnown RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 NAT9Q9BTE0 207 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 AARSD1Q9BTE6 412 aaKnown RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 GEMIN8Q9NWZ8 242 aaKnown RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 FARSAQ9Y285 508 aaKnown RBP14.24□□□□□ -0.13
USP28-204ENST00000537642 DHRS7Q9Y394 339 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 COMMD10Q9Y6G5 202 aa14.24□□□□□ -0.13
USP28-204ENST00000537642 CCDC88CQ9P219 2028 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms