RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 RPL22P35268 128 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 BPIFB3P59826 476 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ABRQ12979 859 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC9A5Q14940 896 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ANKRD20A4Q4UJ75 823 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ARTNQ5T4W7 220 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 FAM92BQ6ZTR7 304 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF438Q7Z4V0 828 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PSTKQ8IV42 348 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 LSMEM1Q8N8F7 131 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF398Q8TD17 642 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 EXT2Q93063 718 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CCDC74AQ96AQ1 378 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ISG20Q96AZ6 181 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CXorf40BQ96DE9 158 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PPM1MQ96MI6 270 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 SPATA13Q96N96 652 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 TMEM237Q96Q45 408 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CCDC3Q9BQI4 270 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CLPBQ9H078 707 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 LATS2Q9NRM7 1088 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PCOLCE2Q9UKZ9 415 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PCNX1Q96RV3 2341 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 CEP192Q8TEP8 1941 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 ARHGAP10A1A4S6 786 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 WASH4PA8MWX3 477 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 GRID2O43424 1007 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 MAGEC1O60732 1142 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 ANXA9O76027 345 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 PAPSS2O95340 614 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 MMP2P08253 660 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 GRIA3P42263 894 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 SPINT3P49223 89 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 ARSDP51689 593 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 GEMP55040 296 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 TPTEP56180 551 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 LRRC74AQ0VAA2 488 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 ITGADQ13349 1161 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 SPATS1Q496A3 300 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 FBXO48Q5FWF7 155 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 ZDHHC1Q8WTX9 485 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 PHF21AQ96BD5 680 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF669Q96BR6 464 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 TGM7Q96PF1 710 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 ALPK1Q96QP1 1244 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 NUDT22Q9BRQ3 303 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 GRIP2Q9C0E4 1043 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 CDH19Q9H159 772 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 KCNH6Q9H252 994 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 FBRSQ9HAH7 460 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 DLL3Q9NYJ7 618 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC23A2Q9UGH3 650 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 SPATA2Q9UM82 520 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 NENFQ9UMX5 172 aa7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 HEMK1Q9Y5R4 338 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF462Q96JM2 2506 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 A6NCN8 305 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 SUN1O94901 812 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 OR5F1O95221 314 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 ESRRBO95718 433 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 LYNP07948 512 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 CHRM3P20309 590 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 HOXA6P31267 233 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 MAN1A1P33908 653 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 TTKP33981 857 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 ARL4DP49703 201 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 NUBP1P53384 320 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 GPR85P60893 370 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 NRG1Q02297 640 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 GALNT1Q10472 559 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 CTBP1Q13363 440 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 KLHL38Q2WGJ6 581 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 MEI1Q5TIA1 1274 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 ANKRD22Q5VYY1 191 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 IL27RAQ6UWB1 636 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 USP43Q70EL4 1123 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 CDH24Q86UP0 819 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 PHYKPLQ8IUZ5 450 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 CTAGE3PQ8IX95 158 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 PRSS58Q8IYP2 241 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 TTC13Q8NBP0 860 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 TMEM145Q8NBT3 493 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 HIPK4Q8NE63 616 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 CCT6BQ92526 530 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 PEX13Q92968 403 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 RAB7BQ96AH8 199 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 DTD2Q96FN9 168 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 IMP4Q96G21 291 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 LOXL4Q96JB6 756 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 ORAI3Q9BRQ5 295 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 LRRC1Q9BTT6 524 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 IL26Q9NPH9 171 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 INTS9Q9NV88 658 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 FAIMQ9NVQ4 179 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 TAAR2Q9P1P5 351 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 MALT1Q9UDY8 824 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 CYB5R1Q9UHQ9 305 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 DMGDHQ9UI17 866 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 RAXQ9Y2V3 346 aa7.71□□□□□ -1.18
LIMCH1-219ENST00000514096 PTPN13Q12923 2485 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms