RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 MSLNQ13421 630 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 TLR1Q15399 786 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 RBBP7Q16576 425 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 FAM180AQ6UWF9 173 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 UNC5DQ6UXZ4 953 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 PPP1R21Q6ZMI0 780 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 OVCH1Q7RTY7 1134 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 KLHDC8BQ8IXV7 354 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 DNAJC22Q8N4W6 341 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 DNAJB14Q8TBM8 379 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 AMFRQ9UKV5 643 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 PCDHGA10Q9Y5H3 936 aa20.23■□□□□ 0.83
SQSTM1-210ENST00000506042 SLC5A10A0PJK1 596 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 DSCR3O14972 297 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 TPH1P17752 444 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 DCTP40126 519 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 TSFMP43897 325 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 AP2B1P63010 937 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 OCA2Q04671 838 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 CDC16Q13042 620 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 SF1Q15637 639 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 FASTKD1Q53R41 847 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 PPP1R32Q7Z5V6 425 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 MCATQ8IVS2 390 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 FAM71DQ8N9W8 422 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 MAGEC3Q8TD91 643 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 FOPNLQ96NB1 174 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 PANX3Q96QZ0 392 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 LHPPQ9H008 270 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 FBXL4Q9UKA2 621 aa20.22■□□□□ 0.83
SQSTM1-210ENST00000506042 PRPF4O43172 522 aaKnown RBP eCLIP20.21■□□□□ 0.832e-8■■■■□ 26.4
SQSTM1-210ENST00000506042 SRPX2O60687 465 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 EDN3P14138 238 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 MAGP20916 626 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 CD9P21926 228 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 PKLRP30613 574 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 STIP1P31948 543 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 HSPA14Q0VDF9 509 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 TBX2Q13207 712 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 ZNF169Q14929 603 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 KCTD11Q693B1 232 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 PEX26Q7Z412 305 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 PIANPQ8IYJ0 282 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 SLC22A15Q8IZD6 547 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 ZUFSPQ96AP4 578 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 SELENOSQ9BQE4 189 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 SLC26A1Q9H2B4 701 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 CUTCQ9NTM9 273 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 SPHK1Q9NYA1 384 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 IMPACTQ9P2X3 320 aa20.21■□□□□ 0.83
SQSTM1-210ENST00000506042 NUP210LQ5VU65 1888 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 SPTBP11277 2137 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 A0A1B0GUH1 482 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 MROH6A6NGR9 719 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 BTNL10A8MVZ5 291 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 PFDN6O15212 129 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 ERVK-10P10266 1014 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 GABRA4P48169 554 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 ZIC1Q15915 447 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 TC2NQ8N9U0 490 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 RNF214Q8ND24 703 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 OR6P1Q8NGX9 317 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 PEX13Q92968 403 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 CNDP1Q96KN2 507 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 FAM118BQ9BPY3 351 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 CARD6Q9BX69 1037 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 SLC6A20Q9NP91 592 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 UTP6Q9NYH9 597 aaKnown RBP20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 RIMKLBQ9ULI2 386 aa20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 NOVA2Q9UNW9 492 aaKnown RBP20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 EPN1Q9Y6I3 576 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-210ENST00000506042 DYTNA2CJ06 578 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 TARM1B6A8C7 271 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 H3BMH7 237 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 MAP2K7O14733 419 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 PCDH17O14917 1159 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 UMODP07911 640 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 FDXRP22570 491 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 FDFT1P37268 417 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 TTPAP49638 278 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 ZNF787Q6DD87 383 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 PRMT9Q6P2P2 845 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 ISLR2Q6UXK2 745 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 KIAA1328Q86T90 577 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 OR2L8Q8NGY9 312 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 OR4L1Q8NH43 312 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 CFAP61Q8NHU2 1237 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 SKA2Q8WVK7 121 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 RAD51AP1Q96B01 352 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 PANX2Q96RD6 677 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 FRMD8P1Q9BZ68 369 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 PCM1Q15154 2024 aa20.19■□□□□ 0.82
SQSTM1-210ENST00000506042 CCDC162PA2VCL2 907 aa20.18■□□□□ 0.82
SQSTM1-210ENST00000506042 AP3B1O00203 1094 aa20.18■□□□□ 0.82
SQSTM1-210ENST00000506042 HNRNPRO43390 633 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-210ENST00000506042 CXCR2P25025 360 aa20.18■□□□□ 0.82
SQSTM1-210ENST00000506042 ADRA1DP25100 572 aa20.18■□□□□ 0.82
SQSTM1-210ENST00000506042 FOXN2P32314 431 aa20.18■□□□□ 0.82
SQSTM1-210ENST00000506042 CCNFP41002 786 aa20.18■□□□□ 0.82
SQSTM1-210ENST00000506042 CSE1LP55060 971 aaKnown RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms