RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CASC4Q6P4E1 433 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 HPS6Q86YV9 775 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 TTC29Q8NA56 475 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-206ENST00000466591 FDCSPQ8NFU4 85 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 MAGEC3Q8TD91 643 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 SLC29A3Q9BZD2 475 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 EIF2B3Q9NR50 452 aaKnown RBP16.88■□□□□ 0.29
COL7A1-206ENST00000466591 HOMER3Q9NSC5 361 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 ANKMY1Q9P2S6 941 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 TTC7AQ9ULT0 858 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-206ENST00000466591 ZKSCAN5Q9Y2L8 839 aa16.88■□□□□ 0.29
COL7A1-206ENST00000466591 CEP104O60308 925 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 PAMP19021 973 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 ACVR1Q04771 509 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 SEMA3AQ14563 771 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 ZIC1Q15915 447 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 CNSTQ6PJW8 725 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 TTLL10Q6ZVT0 673 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 ZNF534Q76KX8 674 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 LRRC6Q86X45 466 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 FAM20CQ8IXL6 584 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 MPP5Q8N3R9 675 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 ZBTB2Q8N680 514 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 TRIM58Q8NG06 486 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 ADAMTS17Q8TE56 1095 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 COL26A1Q96A83 441 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 RAD51AP1Q96B01 352 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 IL17FQ96PD4 163 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 LRRC4CQ9HCJ2 640 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 EURLQ9NYK6 297 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 LUZP4Q9P127 313 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 SAMD15Q9P1V8 674 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 CDYLQ9Y232 598 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 DRG1Q9Y295 367 aaKnown RBP16.87■□□□□ 0.29
COL7A1-206ENST00000466591 KLHL20Q9Y2M5 609 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 FAM169AQ9Y6X4 670 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 PIKFYVEQ9Y2I7 2098 aa16.87■□□□□ 0.29
COL7A1-206ENST00000466591 E5RI56 91 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 RASGRF2O14827 1237 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 AGFG2O95081 481 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 MGAT1P26572 445 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 VPS41P49754 854 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 TSTA3Q13630 321 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-206ENST00000466591 NKAIN1Q4KMZ8 207 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 RNF187Q5TA31 235 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-206ENST00000466591 FHL5Q5TD97 284 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 MRGPREQ86SM8 312 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 VRK3Q8IV63 474 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 MCATQ8IVS2 390 aaKnown RBP16.86■□□□□ 0.29
COL7A1-206ENST00000466591 GLIS1Q8NBF1 620 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 LKAAEAR1Q8TD35 194 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 TM9SF4Q92544 642 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 PTERQ96BW5 349 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 SELENOSQ9BQE4 189 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 CHRNA10Q9GZZ6 450 aa16.86■□□□□ 0.29
COL7A1-206ENST00000466591 MARCH4Q9P2E8 410 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-206ENST00000466591 VAPBO95292 243 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 CAPN1P07384 714 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 ERVK-10P10266 1014 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 CHRM3P20309 590 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 VARSP26640 1264 aaKnown RBP16.85■□□□□ 0.29
COL7A1-206ENST00000466591 AOAHP28039 575 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 NMBRP28336 390 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 CCNFP41002 786 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 GRM7Q14831 915 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 TCTE1Q5JU00 501 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 OR2Y1Q8NGV0 311 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 OR2L8Q8NGY9 312 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 VPS50Q96JG6 964 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 GBP5Q96PP8 586 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 NUDT9Q9BW91 350 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 CDC23Q9UJX2 597 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 BSNQ9UPA5 3926 aa16.85■□□□□ 0.29
COL7A1-206ENST00000466591 A0A1B0GX78 115 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 H3BMM5 538 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 GPC4O75487 556 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 IPO13O94829 963 aaKnown RBP16.84■□□□□ 0.29
COL7A1-206ENST00000466591 TPBGLP0DKB5 382 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 GNLYP22749 145 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 PEBP1P30086 187 aaKnown RBP16.84■□□□□ 0.29
COL7A1-206ENST00000466591 FMO4P31512 558 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 GRIA3P42263 894 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 BDKRB1P46663 353 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 CD97P48960 835 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 TRIP13Q15645 432 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-206ENST00000466591 VWA5B1Q5TIE3 1220 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 JMJD6Q6NYC1 403 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-206ENST00000466591 DRICH1Q6PGQ1 229 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-206ENST00000466591 FIGLAQ6QHK4 219 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 DNAJC22Q8N4W6 341 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 GALNT11Q8NCW6 608 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 FAM136AQ96C01 138 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 ILKAPQ9H0C8 392 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-206ENST00000466591 CCDC68Q9H2F9 335 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 SYBUQ9NX95 663 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 P4HTMQ9NXG6 502 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 VPS9D1Q9Y2B5 631 aa16.84■□□□□ 0.29
COL7A1-206ENST00000466591 TNRC6AQ8NDV7 1962 aaKnown RBP16.84■□□□□ 0.29
COL7A1-206ENST00000466591 GOLGA8KD6RF30 607 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 GOLGA8TH3BQL2 631 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms