RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 PTCD2Q8WV60 388 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 NXPE2Q96DL1 559 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 Q96MT0 163 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ULBP1Q9BZM6 244 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 MED28Q9H204 178 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 PTGFRNQ9P2B2 879 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 FAM172BPA6NC97 362 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 SDR42E2A6NKP2 422 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 E9PI62 339 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 F8VP50 259 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 RBMXL2O75526 392 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 IPO13O94829 963 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 UNC5CO95185 931 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 CHRNGP07510 517 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 TPBGLP0DKB5 382 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 PKMP14618 531 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 CYP11B1P15538 503 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 CORO1AP31146 461 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 FMO5P49326 533 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 TAF10Q12962 218 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 LSM12Q3MHD2 195 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 INTS11Q5TA45 600 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 CAPN13Q6MZZ7 669 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 TRIM40Q6P9F5 258 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 FAM126BQ8IXS8 530 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 PHTF2Q8N3S3 785 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ZNF276Q8N554 614 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ZNF540Q8NDQ6 660 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 NAT14Q8WUY8 206 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 SMPDL3BQ92485 455 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 C3orf49Q96BT1 292 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 RBM14Q96PK6 669 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 GAL3ST4Q96RP7 486 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 KXD1Q9BQD3 176 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ZSWIM1Q9BR11 485 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 GRHL1Q9NZI5 618 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ACAD8Q9UKU7 415 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 RPH3ALQ9UNE2 315 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 SSR3Q9UNL2 185 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ICKQ9UPZ9 632 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 STXBP5LQ9Y2K9 1186 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 MAFO75444 373 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ZNF432O94892 652 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ERCC2P18074 760 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 AP1S1P61966 158 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 DSC1Q08554 894 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 LAPTM5Q13571 262 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 SEC23BQ15437 767 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ZIK1Q3SY52 487 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 TREML2Q5T2D2 321 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 PAPD7Q5XG87 772 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ARL9Q6T311 187 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 BHLHE22Q8NFJ8 381 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 COPS5Q92905 334 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 MED30Q96HR3 178 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 ZSWIM3Q96MP5 696 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 NEDD4LQ96PU5 975 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 PHF7Q9BWX1 381 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 CRISPLD1Q9H336 500 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 TBCCD1Q9NVR7 557 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 AGO1Q9UL18 857 aaKnown RBP8.48□□□□□ -1.05
SYNE1-206ENST00000367253 PCDHGB1Q9Y5G3 927 aa8.48□□□□□ -1.05
SYNE1-206ENST00000367253 A0A1B0GVM2 712 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 TCAF2A6NFQ2 919 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 C1orf196B1AJZ1 125 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 ERBB2P04626 1255 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 YES1P07947 543 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 MYL9P24844 172 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 GLRBP48167 497 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 SLC1A6P48664 564 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 TTPAP49638 278 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 FMR1Q06787 632 aaKnown RBP eCLIP8.47□□□□□ -1.05
SYNE1-206ENST00000367253 METTL2BQ6P1Q9 378 aaKnown RBP8.47□□□□□ -1.05
SYNE1-206ENST00000367253 ARHGAP36Q6ZRI8 547 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 GTF2H5Q6ZYL4 71 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 TBC1D10CQ8IV04 446 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 CCDC116Q8IYX3 515 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 TRAPPC12Q8WVT3 735 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 RAB7BQ96AH8 199 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 CCDC120Q96HB5 630 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 METTL2AQ96IZ6 378 aaKnown RBP8.47□□□□□ -1.05
SYNE1-206ENST00000367253 VCPIP1Q96JH7 1222 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 DEFB126Q9BYW3 111 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 ELL3Q9HB65 397 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-206ENST00000367253 CLN6Q9NWW5 311 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 MORF4L1Q9UBU8 362 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 NAALADL1Q9UQQ1 740 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 LACTBL1A8MY62 500 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 TCEA3O75764 348 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 IFNA7P01567 189 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 SLC5A3P53794 718 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 CRY2Q49AN0 593 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 HSF5Q4G112 596 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-206ENST00000367253 FAM131AQ6UXB0 335 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 RNF44Q7L0R7 432 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 FAM131BQ86XD5 332 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 PDPRQ8NCN5 879 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 TPK1Q9H3S4 243 aa8.47□□□□□ -1.05
SYNE1-206ENST00000367253 FAM83DQ9H4H8 585 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms