RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 HNRNPKP61978 463 aaKnown RBP eCLIP19.31■□□□□ 0.68
CLN3-205ENST00000359984 ELOCQ15369 112 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 RBBP7Q16576 425 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 PEAR1Q5VY43 1037 aaPredicted RBP19.31■□□□□ 0.68
CLN3-205ENST00000359984 SYTL1Q8IYJ3 562 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 MENTQ9BUN1 341 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 ERVMER34-1Q9H9K5 563 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 MID1IP1Q9NPA3 183 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 INTS7Q9NVH2 962 aaKnown RBP19.31■□□□□ 0.68
CLN3-205ENST00000359984 ANGPTL3Q9Y5C1 460 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 COLEC10Q9Y6Z7 277 aa19.31■□□□□ 0.68
CLN3-205ENST00000359984 KMT2EQ8IZD2 1858 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 OR7A17O14581 309 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 GALR2O43603 387 aaPredicted RBP19.3■□□□□ 0.68
CLN3-205ENST00000359984 SNX3O60493 162 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 TROVE2P10155 538 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-205ENST00000359984 PRDX3P30048 256 aaKnown RBP19.3■□□□□ 0.68
CLN3-205ENST00000359984 PNLIPRP1P54315 467 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 FASTKQ14296 549 aaKnown RBP19.3■□□□□ 0.68
CLN3-205ENST00000359984 SH2D4BQ5SQS7 431 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 SFTPA2Q8IWL1 248 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 LRRC56Q8IYG6 542 aaPredicted RBP19.3■□□□□ 0.68
CLN3-205ENST00000359984 ZNF548Q8NEK5 533 aaPredicted RBP19.3■□□□□ 0.68
CLN3-205ENST00000359984 FAM46DQ8NEK8 389 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 OR52B6Q8NGF0 335 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 RFWD2Q8NHY2 731 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 AGAP11Q8TF27 550 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 PATE1Q8WXA2 126 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 CXorf40BQ96DE9 158 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 MED8Q96G25 268 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 TRIM55Q9BYV6 548 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 IPPKQ9H8X2 491 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 LNPEPQ9UIQ6 1025 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 FANCMQ8IYD8 2048 aa19.3■□□□□ 0.68
CLN3-205ENST00000359984 E7ENX8 843 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 ERGP11308 486 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 EPB42P16452 691 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 EPORP19235 508 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 PIK3CGP48736 1102 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 TAP2Q03519 686 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 ARHGAP19Q14CB8 494 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 FAM219BQ5XKK7 198 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 PRR23BQ6ZRT6 265 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 SPATA21Q7Z572 469 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 SYVN1Q86TM6 617 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 THOC6Q86W42 341 aaKnown RBP19.29■□□□□ 0.68
CLN3-205ENST00000359984 SNX31Q8N9S9 440 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 ZNF382Q96SR6 550 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 DNAJC11Q9NVH1 559 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 ZNF225Q9UK10 706 aa19.29■□□□□ 0.68
CLN3-205ENST00000359984 TDRD6O60522 2096 aaKnown RBP19.29■□□□□ 0.68
CLN3-205ENST00000359984 TMEM233B4DJY2 109 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 AQP9O43315 295 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 PIAS2O75928 621 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 NDUFS1P28331 727 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 HSD17B2P37059 387 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 CYP2A13Q16696 494 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 GKN2Q86XP6 184 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 NAGSQ8N159 534 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 OR52E1Q8NGJ3 308 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 OR4K3Q96R72 315 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 SPATA7Q9P0W8 599 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 KLHL14Q9P2G3 628 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 DCTN4Q9UJW0 460 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 YY2O15391 372 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 SDC3O75056 442 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 XRCC1P18887 633 aaPredicted RBP19.28■□□□□ 0.68
CLN3-205ENST00000359984 ERVPABLB-1P60509 514 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 TBPL1P62380 186 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 LPAL2Q16609 132 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 CAPN13Q6MZZ7 669 aaPredicted RBP19.28■□□□□ 0.68
CLN3-205ENST00000359984 GPRIN3Q6ZVF9 776 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 WDR75Q8IWA0 830 aaKnown RBP19.28■□□□□ 0.68
CLN3-205ENST00000359984 C2orf73Q8N5S3 287 aaPredicted RBP19.28■□□□□ 0.68
CLN3-205ENST00000359984 DCBLD1Q8N8Z6 715 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 ZDHHC1Q8WTX9 485 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 CDK15Q96Q40 435 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 SGPP1Q9BX95 441 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 COL25A1Q9BXS0 654 aaPredicted RBP19.28■□□□□ 0.68
CLN3-205ENST00000359984 XKR8Q9H6D3 395 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 KIR3DX1Q9H7L2 352 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 KCNK13Q9HB14 408 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 ABCF3Q9NUQ8 709 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 UCKL1Q9NWZ5 548 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 TRAF6Q9Y4K3 522 aa19.28■□□□□ 0.68
CLN3-205ENST00000359984 USP34Q70CQ2 3546 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 KIR2DS5A0A0G2JLQ3 304 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 A0A0G2JNG1 304 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 OR5K4A6NMS3 321 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 PRR33A8MZF0 331 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 B4DGG1 531 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 KIR2DS3K7RE56 304 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 ESRRBO95718 433 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 OTCP00480 354 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 HOXD12P35452 270 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 PKNOX1P55347 436 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 TRAF3Q13114 568 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 TSTA3Q13630 321 aaPredicted RBP19.27■□□□□ 0.68
CLN3-205ENST00000359984 KIR2DS5Q14953 304 aa19.27■□□□□ 0.68
CLN3-205ENST00000359984 GKAP1Q5VSY0 366 aaPredicted RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms