RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PLPP6Q8IY26 295 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 OFCC1Q8IZS5 231 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 TMBIM1Q969X1 311 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 FAM83DQ9H4H8 585 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 SERHLQ9NQF3 203 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 SPHK2Q9NRA0 654 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 SLC22A14Q9Y267 594 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 PCDHB14Q9Y5E9 798 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 CROCCQ5TZA2 2017 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 ELOVL7A1L3X0 281 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 PRPH2P23942 346 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 SP140Q13342 867 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 NKG7Q16617 165 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 TBCDQ9BTW9 1192 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 UGT2B28Q9BY64 529 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 KAT8Q9H7Z6 458 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 TDP1Q9NUW8 608 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 INVSQ9Y283 1065 aa20.29■□□□□ 0.84
CCDC88B-203ENST00000359902 H0Y858 1186 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 PRPS2P11908 318 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ZNF30P17039 623 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 TACR1P25103 407 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 PCSK6P29122 969 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 VIPR1P32241 457 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 RECQLP46063 649 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ABRAXAS1Q6UWZ7 409 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 Q6ZVL8 140 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 NECAB2Q7Z6G3 386 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 PHACTR4Q8IZ21 702 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 FBXO30Q8TB52 745 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 MCOLN3Q8TDD5 553 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ADAMTS16Q8TE57 1224 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 TCF25Q9BQ70 676 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 LIMD1Q9UGP4 676 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ERVW-1Q9UQF0 538 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 HIDE1A8MVS5 230 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 KPNA5O15131 536 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ERN1O75460 977 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 RFPL2O75678 378 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 CYP2A7P20853 494 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ITPKAP23677 461 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 MTHFRP42898 656 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 EPHA5P54756 1037 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 DMC1Q14565 340 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 LY6G5CQ5SRR4 150 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ATG9BQ674R7 924 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 LEMD2Q8NC56 503 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 DNAJB8Q8NHS0 232 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 CMTM7Q96FZ5 175 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 HEPHQ9BQS7 1158 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 KCNH6Q9H252 994 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 DNAJC11Q9NVH1 559 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ETAA1Q9NY74 926 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 RSL24D1Q9UHA3 163 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 MAN2B2Q9Y2E5 1009 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 AP3M1Q9Y2T2 418 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 PTPRSQ13332 1948 aa20.28■□□□□ 0.84
CCDC88B-203ENST00000359902 ANKRD33BA6NCL7 494 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 PABPN1LA6NDY0 278 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 CXCR6O00574 342 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 SCELO95171 688 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 CYP2A6P11509 494 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 TCF3P15923 654 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 S100A3P33764 101 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 ARSFP54793 590 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 AP1S2P56377 157 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 LRIF1Q5T3J3 769 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 ELMSAN1Q6PJG2 1045 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 GCNT7Q6ZNI0 430 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 RASGRP3Q8IV61 690 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 BEND7Q8N7W2 519 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 OR52E4Q8NGH9 312 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 FRS2Q8WU20 508 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 ELMO1Q92556 727 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 APIPQ96GX9 242 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 TSSK3Q96PN8 268 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 ATG10Q9H0Y0 220 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 PPT2Q9UMR5 302 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 MAGED1Q9Y5V3 778 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 A0A096LPI6 279 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 H0YAE9 185 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 LEFTY1O75610 366 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 SDC1P18827 310 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 DDX6P26196 483 aaKnown RBP eCLIP20.27■□□□□ 0.842e-6■■■■■ 38.4
CCDC88B-203ENST00000359902 ETV3P41162 512 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 CDK9P50750 372 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 ALDH3A2P51648 485 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 ARSIQ5FYB1 569 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 NEK10Q6ZWH5 1172 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 CALHM3Q86XJ0 350 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 MICU2Q8IYU8 434 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 CYB5D2Q8WUJ1 264 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 SORCS1Q8WY21 1168 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 INPP5KQ9BT40 448 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 OSBPL6Q9BZF3 934 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 PCDH12Q9NPG4 1184 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 HPS4Q9NQG7 708 aa20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 DDX18Q9NVP1 670 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-203ENST00000359902 TTC34A8MYJ7 566 aa20.26■□□□□ 0.83
CCDC88B-203ENST00000359902 CFAP99D6REC4 459 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms