RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RASGRF2O14827 1237 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 PFDN6O15212 129 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 ZNF749O43361 778 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 USP1O94782 785 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 KLK3P07288 261 aaPredicted RBP17.72■□□□□ 0.43
CLN3-202ENST00000355477 SFTPCP11686 197 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 PKMP14618 531 aaKnown RBP17.72■□□□□ 0.43
CLN3-202ENST00000355477 IVDP26440 423 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 PTPN4P29074 926 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 NFKB2Q00653 900 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 KCNAB2Q13303 367 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 THOC5Q13769 683 aaKnown RBP17.72■□□□□ 0.43
CLN3-202ENST00000355477 PTK6Q13882 451 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 DEFB110Q30KQ9 67 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 CNSTQ6PJW8 725 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 DNAJC22Q8N4W6 341 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 OR2L8Q8NGY9 312 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 SLCO2A1Q92959 643 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 CHRNA10Q9GZZ6 450 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 SPRTNQ9H040 489 aaPredicted RBP17.72■□□□□ 0.43
CLN3-202ENST00000355477 ADNPQ9H2P0 1102 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 FBXO6Q9NRD1 293 aaPredicted RBP17.72■□□□□ 0.43
CLN3-202ENST00000355477 INTS10Q9NVR2 710 aaKnown RBP17.72■□□□□ 0.43
CLN3-202ENST00000355477 ASIC3Q9UHC3 531 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 FARSAQ9Y285 508 aaKnown RBP17.72■□□□□ 0.43
CLN3-202ENST00000355477 KCNMB2Q9Y691 235 aa17.72■□□□□ 0.43
CLN3-202ENST00000355477 CDC14CA4D256 554 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 CTAGE9A4FU28 777 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 H3BMM5 538 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 DNALI1O14645 258 aaPredicted RBP17.71■□□□□ 0.43
CLN3-202ENST00000355477 FANCGO15287 622 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 PRICKLE3O43900 615 aaPredicted RBP17.71■□□□□ 0.43
CLN3-202ENST00000355477 BANF1O75531 89 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 MATN4O95460 622 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 RECKO95980 971 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 CAPN1P07384 714 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 LONRF1Q17RB8 773 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 MSS51Q4VC12 460 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 ACSBG2Q5FVE4 666 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 ZNF549Q6P9A3 640 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 ZBTB2Q8N680 514 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 DENND1AQ8TEH3 1009 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 APOBEC4Q8WW27 367 aaKnown RBP17.71■□□□□ 0.43
CLN3-202ENST00000355477 RAD51AP1Q96B01 352 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 SLC30A3Q99726 388 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 SLC25A18Q9H1K4 315 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 C20orf96Q9NUD7 363 aaPredicted RBP17.71■□□□□ 0.43
CLN3-202ENST00000355477 SLC39A10Q9ULF5 831 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 MED16Q9Y2X0 877 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 FAM169AQ9Y6X4 670 aa17.71■□□□□ 0.43
CLN3-202ENST00000355477 MDC1Q14676 2089 aaKnown RBP17.7■□□□□ 0.42
CLN3-202ENST00000355477 TNRC6AQ8NDV7 1962 aaKnown RBP17.7■□□□□ 0.42
CLN3-202ENST00000355477 MYO18BQ8IUG5 2567 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 E7EQ34 232 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 OR2B3O76000 313 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 MAGP20916 626 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 SLC1A2P43004 574 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 CLCN7P51798 805 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 RPS15P62841 145 aaKnown RBP17.7■□□□□ 0.42
CLN3-202ENST00000355477 PTCHD3Q3KNS1 767 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 HSP90AA5PQ58FG0 334 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 FAM69BQ5VUD6 431 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 IZUMO3Q5VZ72 239 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 TTC23LQ6PF05 361 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 KLHL7Q8IXQ5 586 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 N4BP2L2Q92802 583 aaPredicted RBP17.7■□□□□ 0.42
CLN3-202ENST00000355477 NAPGQ99747 312 aaPredicted RBP17.7■□□□□ 0.42
CLN3-202ENST00000355477 POLHQ9Y253 713 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 VPS9D1Q9Y2B5 631 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 SAR1BQ9Y6B6 198 aa17.7■□□□□ 0.42
CLN3-202ENST00000355477 E5RI56 91 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 HAUS5O94927 633 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 ATP5DP30049 168 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 MPP1Q00013 466 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 DHX9Q08211 1270 aaKnown RBP17.69■□□□□ 0.42
CLN3-202ENST00000355477 IL10RAQ13651 578 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 SF1Q15637 639 aaKnown RBP17.69■□□□□ 0.42
CLN3-202ENST00000355477 KLHL38Q2WGJ6 581 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 ZNF385CQ66K41 422 aaPredicted RBP17.69■□□□□ 0.42
CLN3-202ENST00000355477 FCRL6Q6DN72 434 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 IGDCC3Q8IVU1 814 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 SYTL1Q8IYJ3 562 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 GPR135Q8IZ08 494 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 ENDOVQ8N8Q3 282 aaKnown RBP17.69■□□□□ 0.42
CLN3-202ENST00000355477 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.69■□□□□ 0.42
CLN3-202ENST00000355477 GIMAP7Q8NHV1 300 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 SLC22A18Q96BI1 424 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 FOPNLQ96NB1 174 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 TUBD1Q9UJT1 453 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 FBXO5Q9UKT4 447 aa17.69■□□□□ 0.42
CLN3-202ENST00000355477 A0A1W2PPV9 198 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 ARHGEF33A8MVX0 844 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 CBSLP0DN79 551 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 PGAM1P18669 254 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 PSMB5P28074 263 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 CBSP35520 551 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 CCNFP41002 786 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 FASTKQ14296 549 aaKnown RBP17.68■□□□□ 0.42
CLN3-202ENST00000355477 CRYMQ14894 314 aa17.68■□□□□ 0.42
CLN3-202ENST00000355477 UGT8Q16880 541 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms