RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PSKH1P11801 424 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 CASRP41180 1078 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 MAP3K8P41279 467 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 RPS9P46781 194 aaKnown RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 NR0B1P51843 470 aaKnown RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 CD47Q08722 323 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 BNIP1Q12981 228 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 SH3PXD2AQ5TCZ1 1133 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 FSTL4Q6MZW2 842 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 SYVN1Q86TM6 617 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 IRF2BPLQ9H1B7 796 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 PNPLA8Q9NP80 782 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 MRPS17Q9Y2R5 130 aaKnown RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 PGLSO95336 258 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 ACSL1P33121 698 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 CASP7P55210 303 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 FAPQ12884 760 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 ZNF311Q5JNZ3 666 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 TSTD2Q5T7W7 516 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 NXPE1Q8N323 547 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 RFKQ969G6 155 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 DGAT2Q96PD7 388 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 HSD17B14Q9BPX1 270 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 TTTY10Q9BZA0 68 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 PREBQ9HCU5 417 aa12.39□□□□□ -0.43
SDC3-201ENST00000336798 CUEDC1Q9NWM3 386 aaPredicted RBP12.39□□□□□ -0.43
SDC3-201ENST00000336798 SLC33A1O00400 549 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 IL33O95760 270 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 OR12D2P58182 307 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 PRKCZQ05513 592 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 USF2Q15853 346 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 CNPY1Q3B7I2 92 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 AMZ2Q86W34 360 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 GALNT15Q8N3T1 639 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ARHGAP9Q9BRR9 750 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 SLC39A3Q9BRY0 314 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ZSCAN5AQ9BUG6 496 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 CDC7O00311 574 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 MATN3O15232 486 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 LRCH4O75427 683 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 MTHFD1P11586 935 aaKnown RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 MSX1P28360 303 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 LCP2Q13094 533 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 FRMD7Q6ZUT3 714 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ASB18Q6ZVZ8 466 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 TMEM192Q8IY95 271 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 SH3RF2Q8TEC5 729 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 UFD1Q92890 307 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 CAPNS2Q96L46 248 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ANKHQ9HCJ1 492 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 AMBNQ9NP70 447 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 SMPD3Q9NY59 655 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 KLRF1Q9NZS2 232 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 GRXCR1A8MXD5 290 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 E7EQ34 232 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 L7N2F9 121 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 PLK4O00444 970 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 OPN1SWP03999 348 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 VAMP2P63027 116 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 OGFRL1Q5TC84 451 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 FAM13CQ8NE31 585 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ZNF548Q8NEK5 533 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 OR13C4Q8NGS5 318 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 TMEM203Q969S6 136 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 METTL8Q9H825 291 aaKnown RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 WASF2Q9Y6W5 498 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ZNF536O15090 1300 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 A0A1B0GVT2 93 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 TPSB2P20231 275 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 GSCP56915 257 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 EFR3AQ14156 821 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ADGRE1Q14246 886 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 TPSAB1Q15661 275 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 PRAMEF17Q5VTA0 474 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 FAM46DQ8NEK8 389 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 FAM163AQ96GL9 167 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 LENG8Q96PV6 779 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 GKN1Q9NS71 199 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 SYNPO2Q9UMS6 1093 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ZNF541Q9H0D2 1346 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 C8orf89P0DMQ9 161 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 MAGEA2P43356 314 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ADNP2Q6IQ32 1131 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 ZNF598Q86UK7 904 aaKnown RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 CMTR2Q8IYT2 770 aaKnown RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 TESCQ96BS2 214 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 WDR77Q9BQA1 342 aaPredicted RBP12.38□□□□□ -0.43
SDC3-201ENST00000336798 COL1A2P08123 1366 aa12.38□□□□□ -0.43
SDC3-201ENST00000336798 EDNRAP25101 427 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 MAGEA8P43361 318 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 C1orf189Q5VU69 101 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 TRMOQ9BU70 441 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 GRHL1Q9NZI5 618 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 IFT80Q9P2H3 777 aaPredicted RBP12.37□□□□□ -0.43
SDC3-201ENST00000336798 TNFRSF10BO14763 440 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 PCDH7O60245 1069 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 B4GALT4O60513 344 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 CH25HO95992 272 aa12.37□□□□□ -0.43
SDC3-201ENST00000336798 NUDT17P0C025 328 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms