RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MNDAP41218 407 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 ALDH3A2P51648 485 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 MAPK12P53778 367 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 DMPKQ09013 629 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 TFCP2Q12800 502 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 CAMK2DQ13557 499 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 CUL3Q13618 768 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 ITGA7Q13683 1181 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 ODF4Q2M2E3 257 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 SPECC1Q5M775 1068 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 CEACAM20Q6UY09 585 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 RBMS3Q6XE24 437 aaKnown RBP3.08□□□□□ -1.92
HMGB1-201ENST00000326004 TRPT1Q86TN4 253 aaKnown RBP3.08□□□□□ -1.92
HMGB1-201ENST00000326004 ISCA2Q86U28 154 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 GPATCH11Q8N954 259 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 GRHL3Q8TE85 626 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 RMDN2Q96LZ7 410 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 SPAG5Q96R06 1193 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 CPNE1Q99829 537 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 PSD2Q9BQI7 771 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 ANKRD2Q9GZV1 360 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 FGF21Q9NSA1 209 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 ZNF624Q9P2J8 865 aaPredicted RBP3.08□□□□□ -1.92
HMGB1-201ENST00000326004 ANAPC5Q9UJX4 755 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 MYH15Q9Y2K3 1946 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 MAPKBP1O60336 1514 aa3.08□□□□□ -1.92
HMGB1-201ENST00000326004 KIF26BQ2KJY2 2108 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 LOC101059948A0A1B0GTJ6 334 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 DUXAA6NLW8 204 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 BLOC1S5-TXNDC5H3BN57 136 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 DNM1LO00429 736 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 PLOD2O00469 737 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 ATP6V0E1O15342 81 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 DIAPH2O60879 1101 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 TBCAO75347 108 aaKnown RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 OR52Z1P0C646 297 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 SMIM18P0DKX4 95 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 HAPLN1P10915 354 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 FDPSP14324 419 aaKnown RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 CA4P22748 312 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 CA6P23280 308 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 SP100P23497 879 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 PTPN3P26045 913 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 HOXC8P31273 242 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 PTGER4P35408 488 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 CCR10P46092 362 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 POLR2LP62875 67 aaKnown RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 PPIGQ13427 754 aaKnown RBP eCLIP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 CA9Q16790 459 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 ITPRIPL2Q3MIP1 535 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 DCAF10Q5QP82 559 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 MEX3BQ6ZN04 569 aaKnown RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 NUP54Q7Z3B4 507 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 ARHGAP22Q7Z5H3 698 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 ADCK2Q7Z695 626 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 TLK2Q86UE8 772 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 RYBPQ8N488 228 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 DNAJC22Q8N4W6 341 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 IQUBQ8NA54 791 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 THAP8Q8NA92 274 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 GRAPLQ8TC17 118 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 PHLDA1Q8WV24 401 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 FCAMRQ8WWV6 532 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 DNASE2BQ8WZ79 361 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 EXT2Q93063 718 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 SPSB1Q96BD6 273 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 ZNF524Q96C55 264 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 FER1L6-AS2Q96M78 137 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 ZMAT2Q96NC0 199 aaKnown RBP3.07□□□□□ -1.92
HMGB1-201ENST00000326004 ZNF558Q96NG5 402 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 FNBP1Q96RU3 617 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 RAD9AQ99638 391 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 LAT2Q9GZY6 243 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 S1PR5Q9H228 398 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 ST6GALNAC4Q9H4F1 302 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 CDH20Q9HBT6 801 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 SDF2L1Q9HCN8 221 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 TBC1D7Q9P0N9 293 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 CACNG4Q9UBN1 327 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 DAPK2Q9UIK4 370 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 LIPGQ9Y5X9 500 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 PTPRTO14522 1441 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 IQSEC2Q5JU85 1478 aa3.07□□□□□ -1.92
HMGB1-201ENST00000326004 IGLV9-49A0A0B4J1Y8 123 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 ANKRD61A6NGH8 418 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 PMS2P5A8MQ11 134 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SLC22A2O15244 555 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 KIF21BO75037 1637 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 EDN1P05305 212 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 CSN3P07498 182 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SP1P08047 785 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 FRMD6-AS1P0C7T7 363 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 PLA2G4BP0C869 781 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 ERVK-10P10266 1014 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SCG2P13521 617 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 IRF2P14316 349 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 EPCAMP16422 314 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 CD22P20273 847 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 TCEA1P23193 301 aaKnown RBP3.06□□□□□ -1.92
HMGB1-201ENST00000326004 PSMA3P25788 255 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms