RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MAPK9P45984 424 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 AP1S1P61966 158 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 NAE1Q13564 534 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 CES5AQ6NT32 575 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 OSTM1Q86WC4 334 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 CNIH3Q8TBE1 160 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 LRCH3Q96II8 777 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 PCYT2Q99447 389 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 POLE4Q9NR33 117 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 INTS7Q9NVH2 962 aaKnown RBP18.91■□□□□ 0.62
USP48-201ENST00000308271 DNAJC15Q9Y5T4 150 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.91■□□□□ 0.62
USP48-201ENST00000308271 FAM72CH0Y354 149 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 CCNYL3P0C7X3 344 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 KCNE1P15382 129 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 NUDT6P53370 316 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 PGGT1BP53609 377 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 MADCAM1Q13477 382 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 FAM72AQ5TYM5 149 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 FAM72DQ6L9T8 149 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 FAM72BQ86X60 149 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 LHPPQ9H008 270 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 NAV1Q8NEY1 1877 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 J3KR12 359 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 SEMA3DO95025 777 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 CELF2O95319 508 aaKnown RBP18.9■□□□□ 0.62
USP48-201ENST00000308271 MATN4O95460 622 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 PSKH1P11801 424 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 SOCS4Q8WXH5 440 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 KCTD3Q9Y597 815 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 GSAPA4D1B5 854 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 SLC1A7O00341 560 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 OR4D2P58180 307 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 C1QTNF8P60827 252 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 GK3PQ14409 553 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 KLHL22Q53GT1 634 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 TRPM4Q8TD43 1214 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 SLC2A13Q96QE2 648 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 ERVK-18Q9QC07 812 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 RFPL2O75678 378 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 SLITRK5O94991 958 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 TAS2R41P59536 307 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 PITX1P78337 314 aaPredicted RBP18.9■□□□□ 0.62
USP48-201ENST00000308271 GOLGA7Q7Z5G4 137 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 TMPRSS11BQ86T26 416 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 PEX13Q92968 403 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 OR2B2Q9GZK3 357 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 PRKAG2Q9UGJ0 569 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 PCDHGA11Q9Y5H2 935 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 FAM92AA1XBS5 289 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 KPNA3O00505 521 aaPredicted RBP18.9■□□□□ 0.62
USP48-201ENST00000308271 FGBP02675 491 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 GGT5P36269 586 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 PNLIPRP1P54315 467 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 TSTQ16762 297 aaKnown RBP18.9■□□□□ 0.62
USP48-201ENST00000308271 ATG9BQ674R7 924 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 MEIOBQ8N635 442 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 GRIN3AQ8TCU5 1115 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 UFD1Q92890 307 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 SMOQ99835 787 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 SMOC2Q9H3U7 446 aa18.9■□□□□ 0.62
USP48-201ENST00000308271 DYRK3O43781 588 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 XYLBO75191 536 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 EPOP01588 193 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 CKBP12277 381 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 PSMA3P25788 255 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 NSG1P42857 185 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 GMFBP60983 142 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 TIGD5Q53EQ6 642 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 SYCE2Q6PIF2 218 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 FLRT1Q9NZU1 646 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 COMMD3Q9UBI1 195 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 B3GNT3Q9Y2A9 372 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 ARL5CA6NH57 179 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 DFNA5O60443 496 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 MT-ND2P03891 347 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 OR4F3Q6IEY1 312 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 RFKQ969G6 155 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 KCTD7Q96MP8 289 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 NSUN5Q96P11 429 aaKnown RBP18.89■□□□□ 0.61
USP48-201ENST00000308271 HS3ST4Q9Y661 456 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 NUP98P52948 1817 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 RGPD5Q99666 1765 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 PRAMEF33A0A0G2JMD5 474 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 PRAMEF10O60809 474 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 ITGB1P05556 798 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 OPRL1P41146 370 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 CD83Q01151 205 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 SCAPQ12770 1279 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 IGFN1Q86VF2 1251 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 CARM1Q86X55 608 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 KCNN2Q9H2S1 579 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 NKIRAS2Q9NYR9 191 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 EVLQ9UI08 416 aaPredicted RBP18.89■□□□□ 0.61
USP48-201ENST00000308271 HSPE1-MOB4S4R3N1 261 aa18.89■□□□□ 0.61
USP48-201ENST00000308271 COL14A1Q05707 1796 aaKnown RBP18.89■□□□□ 0.61
USP48-201ENST00000308271 KRBA1A5PL33 1030 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 FAM172BPA6NC97 362 aa18.88■□□□□ 0.61
USP48-201ENST00000308271 NME6O75414 186 aaPredicted RBP18.88■□□□□ 0.61
USP48-201ENST00000308271 EFNA1P20827 205 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms