RNA–Protein interactions for RNA: YLR207W

HRD3, Transcript of ER membrane protein that plays a central role in ERAD, yeast

Gene HRD3, Length 2,502 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD3	YLR207W	SBP1	P10080	294 aa	Known RBP	3.02	□□□□□ -1.93
HRD3	YLR207W	INO1	P11986	533 aa		3.02	□□□□□ -1.93
HRD3	YLR207W	VMA4	P22203	233 aa	Known RBP	3.02	□□□□□ -1.93
HRD3	YLR207W	RPL8B	P29453	256 aa	Known RBP	3.02	□□□□□ -1.93
HRD3	YLR207W	VBA5	P36172	582 aa		3.02	□□□□□ -1.93
HRD3	YLR207W	MCM7	P38132	845 aa		3.02	□□□□□ -1.93
HRD3	YLR207W	RIM11	P38615	370 aa		3.02	□□□□□ -1.93
HRD3	YLR207W	FOL1	P53848	824 aa		3.02	□□□□□ -1.93
HRD3	YLR207W	YLR225C	Q05948	407 aa	Known RBP	3.02	□□□□□ -1.93
HRD3	YLR207W	EST2	Q06163	884 aa		3.02	□□□□□ -1.93
HRD3	YLR207W	FMP25	Q08023	583 aa		3.02	□□□□□ -1.93
HRD3	YLR207W	NOP14	Q99207	810 aa	Known RBP	3.02	□□□□□ -1.93
HRD3	YLR207W	ADR1	P07248	1323 aa		3.02	□□□□□ -1.93
HRD3	YLR207W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	3.01	□□□□□ -1.93	RIP-Chip
HRD3	YLR207W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	3.01	□□□□□ -1.93	not detected
HRD3	YLR207W	YKL107W	P34251	309 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	MOT2	P34909	587 aa	Known RBP	3.01	□□□□□ -1.93
HRD3	YLR207W	RER2	P35196	286 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	NEO1	P40527	1151 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	ALR2	P43553	858 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	ROD1	Q02805	837 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	CEF1	Q03654	590 aa	Predicted RBP	3.01	□□□□□ -1.93
HRD3	YLR207W	YDL121C	Q07541	149 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	GLO4	Q12320	285 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	TY3B-G	Q99315	1547 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	PDR10	P51533	1564 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	IDI1	P15496	288 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	MRC1	P25588	1096 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	INP51	P40559	946 aa	Known RBP	3.01	□□□□□ -1.93
HRD3	YLR207W	YMR265C	Q03508	461 aa	Known RBP	3.01	□□□□□ -1.93
HRD3	YLR207W	PPM2	Q08282	695 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	RKM4	Q12504	494 aa		3.01	□□□□□ -1.93
HRD3	YLR207W	IKI3	Q06706	1349 aa	Known RBP	3.01	□□□□□ -1.93
HRD3	YLR207W	CAN1	P04817	590 aa		3	□□□□□ -1.93
HRD3	YLR207W	ERR1	P0CX10	437 aa		3	□□□□□ -1.93
HRD3	YLR207W	ERR2	P0CX11	437 aa		3	□□□□□ -1.93
HRD3	YLR207W	PRP5	P21372	849 aa	Predicted RBP	3	□□□□□ -1.93
HRD3	YLR207W	FPS1	P23900	669 aa		3	□□□□□ -1.93
HRD3	YLR207W	SYP1	P25623	870 aa	Known RBP	3	□□□□□ -1.93
HRD3	YLR207W	DPB3	P27344	201 aa		3	□□□□□ -1.93
HRD3	YLR207W	CDC11	P32458	415 aa		3	□□□□□ -1.93
HRD3	YLR207W	YHR020W	P38708	688 aa	Known RBP	3	□□□□□ -1.93
HRD3	YLR207W	ERP2	P39704	215 aa		3	□□□□□ -1.93
HRD3	YLR207W	MDG1	P53885	366 aa		3	□□□□□ -1.93
HRD3	YLR207W	GCR2	Q01722	534 aa		3	□□□□□ -1.93
HRD3	YLR207W	TMA64	Q04600	565 aa	Known RBP	3	□□□□□ -1.93
HRD3	YLR207W	IQG1	Q12280	1495 aa		3	□□□□□ -1.93
HRD3	YLR207W	BNR1	P40450	1375 aa		3	□□□□□ -1.93
HRD3	YLR207W	YSP2	Q06681	1438 aa		3	□□□□□ -1.93
HRD3	YLR207W	ADD66	P36040	267 aa		3	□□□□□ -1.93
HRD3	YLR207W	DAS1	P47005	663 aa		3	□□□□□ -1.93
HRD3	YLR207W	YJR124C	P47159	448 aa		3	□□□□□ -1.93
HRD3	YLR207W	UTP22	P53254	1237 aa	Predicted RBP	3	□□□□□ -1.93
HRD3	YLR207W	CDC19	P00549	500 aa	Known RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	TRX2	P22803	104 aa	Known RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	STE5	P32917	917 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	TYS1	P36421	394 aa	Known RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	CCC2	P38995	1004 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	LSB6	P42951	607 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	YGL176C	P46945	554 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	HLJ1	P48353	224 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	GNP1	P48813	663 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	SCW11	P53189	542 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	UTP8	P53276	713 aa	Known RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	YNR029C	P53729	429 aa	Known RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	YNR063W	P53749	607 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	LAP2	Q10740	671 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	NYV1	Q12255	253 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	NUP170	P38181	1502 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	HTS1	P07263	546 aa	Known RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	PWP2	P25635	923 aa	Known RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	SEA4	P38164	1038 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	EXO5	P38289	585 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	OSH7	P38755	437 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	CNN1	P43618	361 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	HSV2	P50079	448 aa	Predicted RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	BIO5	P53744	561 aa	Known RBP	2.99	□□□□□ -1.93
HRD3	YLR207W	ESC2	Q06340	456 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	REC8	Q12188	680 aa		2.99	□□□□□ -1.93
HRD3	YLR207W	PDR12	Q02785	1511 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	DPS1	P04802	557 aa	Known RBP	2.98	□□□□□ -1.93
HRD3	YLR207W	TOM70	P07213	617 aa	Known RBP	2.98	□□□□□ -1.93
HRD3	YLR207W	RPA135	P22138	1203 aa	Known RBP	2.98	□□□□□ -1.93
HRD3	YLR207W	MKK2	P32491	506 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	HSE1	P38753	452 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	AIM21	P40563	679 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	LEM3	P42838	414 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	HNT2	P49775	206 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	GUP1	P53154	560 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	TIF35	Q04067	274 aa	Known RBP	2.98	□□□□□ -1.93
HRD3	YLR207W	YMR074C	Q04773	145 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	AVO1	Q08236	1176 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	YLL054C	Q12244	843 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	DBP5	P20449	482 aa	Known RBP	2.98	□□□□□ -1.93
HRD3	YLR207W	DIT1	P21623	536 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	2.98	□□□□□ -1.93	not detected
HRD3	YLR207W	MSH2	P25847	964 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	VPS24	P36095	224 aa	Known RBP	2.98	□□□□□ -1.93
HRD3	YLR207W	BOI2	P39969	1040 aa		2.98	□□□□□ -1.93
HRD3	YLR207W	TY4A-J	P47023	414 aa		2.98	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 34.2 ms