RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 GNPATO15228 680 aa11.98□□□□□ -0.49
LINC00339-212ENST00000642072 PHKG2P15735 406 aa11.98□□□□□ -0.49
LINC00339-212ENST00000642072 CDCA8Q53HL2 280 aa11.98□□□□□ -0.49
LINC00339-212ENST00000642072 SLC4A9Q96Q91 983 aa11.98□□□□□ -0.49
LINC00339-212ENST00000642072 ATG3Q9NT62 314 aa11.98□□□□□ -0.49
LINC00339-212ENST00000642072 TMOD3Q9NYL9 352 aa11.98□□□□□ -0.49
LINC00339-212ENST00000642072 ZNF831Q5JPB2 1677 aa11.97□□□□□ -0.49
LINC00339-212ENST00000642072 MMP10P09238 476 aa11.97□□□□□ -0.49
LINC00339-212ENST00000642072 POLKQ9UBT6 870 aa11.97□□□□□ -0.49
LINC00339-212ENST00000642072 ATP6V1AP38606 617 aa11.96□□□□□ -0.49
LINC00339-212ENST00000642072 IFNL2Q8IZJ0 200 aa11.96□□□□□ -0.49
LINC00339-212ENST00000642072 PPM1GO15355 546 aaPredicted RBP11.95□□□□□ -0.5
LINC00339-212ENST00000642072 COL5A3P25940 1745 aaPredicted RBP11.94□□□□□ -0.5
LINC00339-212ENST00000642072 TGFB2P61812 414 aa11.94□□□□□ -0.5
LINC00339-212ENST00000642072 EIF4A2Q14240 407 aaKnown RBP11.94□□□□□ -0.5
LINC00339-212ENST00000642072 KDM6AO15550 1401 aaPredicted RBP11.94□□□□□ -0.5
LINC00339-212ENST00000642072 N4BP2Q86UW6 1770 aaPredicted RBP11.93□□□□□ -0.5
LINC00339-212ENST00000642072 C4AP0C0L4 1744 aa11.93□□□□□ -0.5
LINC00339-212ENST00000642072 BRCA1P38398 1863 aaKnown RBP11.93□□□□□ -0.5
LINC00339-212ENST00000642072 CNTNAP4Q9C0A0 1308 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 A0A0G2JLW4 131 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 ERVV-2B6SEH9 535 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 GYS1P13807 737 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 ADRA2BP18089 450 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 KCNA3P22001 575 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 TRAPPC3LQ5T215 181 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 RC3H1Q5TC82 1133 aaKnown RBP11.92□□□□□ -0.5
LINC00339-212ENST00000642072 NLGN1Q8N2Q7 840 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 DNAJC5GQ8N7S2 189 aa11.92□□□□□ -0.5
LINC00339-212ENST00000642072 ARHGEF1Q92888 912 aaKnown RBP11.92□□□□□ -0.5
LINC00339-212ENST00000642072 RTCBQ9Y3I0 505 aaKnown RBP11.91□□□□□ -0.5
LINC00339-212ENST00000642072 MYH14Q7Z406 1995 aaKnown RBP11.9□□□□□ -0.5
LINC00339-212ENST00000642072 TOMM70O94826 608 aa11.9□□□□□ -0.5
LINC00339-212ENST00000642072 DPEP1P16444 411 aa11.9□□□□□ -0.5
LINC00339-212ENST00000642072 APLP1P51693 650 aa11.9□□□□□ -0.5
LINC00339-212ENST00000642072 DCAF5Q96JK2 942 aa11.9□□□□□ -0.5
LINC00339-212ENST00000642072 NMRK2Q9NPI5 230 aa11.9□□□□□ -0.5
LINC00339-212ENST00000642072 BCS1LQ9Y276 419 aa11.9□□□□□ -0.5
LINC00339-212ENST00000642072 RPS6KA4O75676 772 aa11.89□□□□□ -0.51
LINC00339-212ENST00000642072 ADAMTS7Q9UKP4 1686 aa11.88□□□□□ -0.51
LINC00339-212ENST00000642072 RBM42Q9BTD8 480 aaKnown RBP11.88□□□□□ -0.51
LINC00339-212ENST00000642072 CCDC87Q9NVE4 849 aa11.88□□□□□ -0.51
LINC00339-212ENST00000642072 ARFGEF1Q9Y6D6 1849 aa11.88□□□□□ -0.51
LINC00339-212ENST00000642072 TJP1Q07157 1748 aa11.87□□□□□ -0.51
LINC00339-212ENST00000642072 HSP90AB1P08238 724 aaKnown RBP11.87□□□□□ -0.51
LINC00339-212ENST00000642072 RFC4P35249 363 aa11.87□□□□□ -0.51
LINC00339-212ENST00000642072 TNNT2P45379 298 aaPredicted RBP11.87□□□□□ -0.51
LINC00339-212ENST00000642072 DDR1Q08345 913 aa11.87□□□□□ -0.51
LINC00339-212ENST00000642072 ARHGAP27Q6ZUM4 889 aa11.87□□□□□ -0.51
LINC00339-212ENST00000642072 USP42Q9H9J4 1324 aaKnown RBP11.86□□□□□ -0.51
LINC00339-212ENST00000642072 FCHSD2O94868 740 aa11.86□□□□□ -0.51
LINC00339-212ENST00000642072 PLEKHO1Q53GL0 409 aaPredicted RBP11.86□□□□□ -0.51
LINC00339-212ENST00000642072 C9orf131Q5VYM1 1079 aa11.86□□□□□ -0.51
LINC00339-212ENST00000642072 ZNF530Q6P9A1 599 aaPredicted RBP11.86□□□□□ -0.51
LINC00339-212ENST00000642072 AEBP1Q8IUX7 1158 aa11.86□□□□□ -0.51
LINC00339-212ENST00000642072 RBM46Q8TBY0 533 aaKnown RBP11.86□□□□□ -0.51
LINC00339-212ENST00000642072 CRKLP46109 303 aaKnown RBP11.85□□□□□ -0.51
LINC00339-212ENST00000642072 FKBP8Q14318 412 aa11.85□□□□□ -0.51
LINC00339-212ENST00000642072 AMOTQ4VCS5 1084 aa11.85□□□□□ -0.51
LINC00339-212ENST00000642072 SRP68Q9UHB9 627 aaKnown RBP11.85□□□□□ -0.51
LINC00339-212ENST00000642072 TIMELESSQ9UNS1 1208 aa11.85□□□□□ -0.51
LINC00339-212ENST00000642072 PARP3Q9Y6F1 533 aa11.85□□□□□ -0.51
LINC00339-212ENST00000642072 WDR90Q96KV7 1748 aa11.85□□□□□ -0.51
LINC00339-212ENST00000642072 PTCD1O75127 700 aaKnown RBP11.84□□□□□ -0.51
LINC00339-212ENST00000642072 CABP4P57796 275 aa11.84□□□□□ -0.51
LINC00339-212ENST00000642072 INTS5Q6P9B9 1019 aaKnown RBP11.84□□□□□ -0.51
LINC00339-212ENST00000642072 NFATC2IPQ8NCF5 419 aa11.84□□□□□ -0.51
LINC00339-212ENST00000642072 PIM2Q9P1W9 311 aa11.84□□□□□ -0.51
LINC00339-212ENST00000642072 KCPQ6ZWJ8 1503 aa11.84□□□□□ -0.51
LINC00339-212ENST00000642072 POLRMTO00411 1230 aaKnown RBP11.83□□□□□ -0.52
LINC00339-212ENST00000642072 TM4SF1P30408 202 aa11.83□□□□□ -0.52
LINC00339-212ENST00000642072 MTHFSP49914 203 aa11.83□□□□□ -0.52
LINC00339-212ENST00000642072 MRC1P22897 1456 aa11.83□□□□□ -0.52
LINC00339-212ENST00000642072 CHRNA5P30532 468 aa11.82□□□□□ -0.52
LINC00339-212ENST00000642072 HTRA3P83110 453 aa11.82□□□□□ -0.52
LINC00339-212ENST00000642072 DALRD3Q5D0E6 543 aaKnown RBP11.82□□□□□ -0.52
LINC00339-212ENST00000642072 JMYQ8N9B5 988 aa11.82□□□□□ -0.52
LINC00339-212ENST00000642072 FSTL1Q12841 308 aa11.81□□□□□ -0.52
LINC00339-212ENST00000642072 KLRG1Q96E93 195 aa11.81□□□□□ -0.52
LINC00339-212ENST00000642072 PANK3Q9H999 370 aa11.81□□□□□ -0.52
LINC00339-212ENST00000642072 SCN11AQ9UI33 1791 aa11.81□□□□□ -0.52
LINC00339-212ENST00000642072 SOS1Q07889 1333 aaPredicted RBP11.81□□□□□ -0.52
LINC00339-212ENST00000642072 NRXN2Q9P2S2 1712 aa11.8□□□□□ -0.52
LINC00339-212ENST00000642072 IL13P35225 146 aa11.8□□□□□ -0.52
LINC00339-212ENST00000642072 PRELPP51888 382 aa11.8□□□□□ -0.52
LINC00339-212ENST00000642072 C1orf141Q5JVX7 400 aa11.8□□□□□ -0.52
LINC00339-212ENST00000642072 SULT6B1Q6IMI4 303 aa11.8□□□□□ -0.52
LINC00339-212ENST00000642072 RNF181Q9P0P0 153 aa11.8□□□□□ -0.52
LINC00339-212ENST00000642072 TNRC6CQ9HCJ0 1690 aaKnown RBP11.8□□□□□ -0.52
LINC00339-212ENST00000642072 SBF1O95248 1867 aa11.8□□□□□ -0.52
LINC00339-212ENST00000642072 KDM2BQ8NHM5 1336 aa11.8□□□□□ -0.52
LINC00339-212ENST00000642072 USPL1Q5W0Q7 1092 aa11.79□□□□□ -0.52
LINC00339-212ENST00000642072 DNAJC10Q8IXB1 793 aa11.79□□□□□ -0.52
LINC00339-212ENST00000642072 ZC3H4Q9UPT8 1303 aaKnown RBP11.79□□□□□ -0.52
LINC00339-212ENST00000642072 CYP19A1P11511 503 aaPredicted RBP11.78□□□□□ -0.52
LINC00339-212ENST00000642072 POLR3GLQ9BT43 218 aa11.78□□□□□ -0.52
LINC00339-212ENST00000642072 SLC52A2Q9HAB3 445 aa11.78□□□□□ -0.52
LINC00339-212ENST00000642072 BCL2L12Q9HB09 334 aa11.78□□□□□ -0.52
LINC00339-212ENST00000642072 RRAGCQ9HB90 399 aa11.78□□□□□ -0.52
LINC00339-212ENST00000642072 DLEC1Q9Y238 1755 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms