RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 COPB2P35606 906 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 UTP6Q9NYH9 597 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 CCDC173Q0VFZ6 552 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 SART3Q15020 963 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 EFCC1Q9HA90 598 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 ERCC5P28715 1186 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-221ENST00000641996 AMOTL1Q8IY63 956 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 SEL1LQ9UBV2 794 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 ATP6V1AP38606 617 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 FAM184AQ8NB25 1140 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 SETDB1Q15047 1291 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 SLC4A7Q9Y6M7 1214 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 STMND1H3BQB6 276 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 PLIN1O60240 522 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 MAP7D1Q3KQU3 841 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 TTC19Q6DKK2 380 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-221ENST00000641996 LEKR1Q6ZMV7 388 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 WHAMMQ8TF30 809 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 TAOK3Q9H2K8 898 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 CENPJQ9HC77 1338 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-221ENST00000641996 GNAT2P19087 354 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 JAKMIP3Q5VZ66 844 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 DPH6Q7L8W6 267 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 C10orf67Q8IYJ2 551 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.19□□□□□ -1.74
SCN1A-221ENST00000641996 TRIM21P19474 475 aaKnown RBP4.19□□□□□ -1.74
SCN1A-221ENST00000641996 CEP128Q6ZU80 1094 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 ITFG2Q969R8 447 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 RSPH9Q9H1X1 276 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-221ENST00000641996 SEMA3EO15041 775 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 CADPSQ9ULU8 1353 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 OATP04181 439 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 SNX16P57768 344 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 NUP133Q8WUM0 1156 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 RSRC1Q96IZ7 334 aaKnown RBP4.19□□□□□ -1.74
SCN1A-221ENST00000641996 MATR3P43243 847 aaKnown RBP eCLIP4.19□□□□□ -1.741e-10■■■■■ 37.8
SCN1A-221ENST00000641996 CCT2P78371 535 aaKnown RBP4.19□□□□□ -1.74
SCN1A-221ENST00000641996 CCDC144BQ3MJ40 725 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 CCDC114Q96M63 670 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 PSEN1P49768 467 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 NUCB2P80303 420 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 SYNE3Q6ZMZ3 975 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 NCAPGQ9BPX3 1015 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 KLF15Q9UIH9 416 aa4.19□□□□□ -1.74
SCN1A-221ENST00000641996 BIRC3Q13489 604 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 FEZ1Q99689 392 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 IP6K2Q9UHH9 426 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 TSKSQ9UJT2 592 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 CERKQ8TCT0 537 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 HELQQ8TDG4 1101 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 MYH11P35749 1972 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 TTC39AQ5SRH9 613 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 MICALL1Q8N3F8 863 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 MYO1BO43795 1136 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 ICE2Q659A1 982 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 POM121Q96HA1 1249 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 RMDN2Q96LZ7 410 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 ZNF396Q96N95 335 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 LINC00854A0A1B0GVQ3 168 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 LMNB2Q03252 620 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 MORC1Q86VD1 984 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 KIAA0825Q8IV33 1275 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 TAF4BQ92750 862 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 C6orf203Q9P0P8 240 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 KIF4BQ2VIQ3 1234 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 ANKRD18AQ8IVF6 992 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 SPOCK2Q92563 424 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 RPGRQ92834 1020 aaKnown RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 INTUQ9ULD6 942 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 ZNF189O75820 626 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 WDR81Q562E7 1941 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 B3GALNT1O75752 331 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 MTA1Q13330 715 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 TRIM63Q969Q1 353 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 SYAP1Q96A49 352 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 RPS6KC1Q96S38 1066 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 IQCGQ9H095 443 aaKnown RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 AASDHPPTQ9NRN7 309 aa4.18□□□□□ -1.74
SCN1A-221ENST00000641996 RRP12Q5JTH9 1297 aaKnown RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 GFM2Q969S9 779 aaKnown RBP4.18□□□□□ -1.74
SCN1A-221ENST00000641996 GBP6Q6ZN66 633 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 FILIP1Q7Z7B0 1213 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 KLHL23Q8NBE8 558 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 SMC2O95347 1197 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 PDCL2Q8N4E4 241 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 H0YC42 278 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 KRT18P05783 430 aaKnown RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 GCKP35557 465 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 MCM10Q7L590 875 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 ARPC5LQ9BPX5 153 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 SERPINA10Q9UK55 444 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 NOL7Q9UMY1 257 aaKnown RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 CLNS1AP54105 237 aaKnown RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 UNC45AQ9H3U1 944 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 YY1AP1Q9H869 796 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 CAPN10Q9HC96 672 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 PPP4R2Q9NY27 417 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 TMCC3Q9ULS5 477 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms