RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ZSCAN16Q9H4T2 348 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 RRAGDQ9NQL2 400 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 SPAG1Q07617 926 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 TOP1P11387 765 aaKnown RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 ZKSCAN8Q15776 578 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 ALS2CR12Q96Q35 445 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 MPHOSPH8Q99549 860 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 TAOK3Q9H2K8 898 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 OTUD6BQ8N6M0 293 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 FBLN2P98095 1184 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 LARP1BQ659C4 914 aaKnown RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 FBF1Q8TES7 1133 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 VCXQ9H320 206 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 ARID3CA6NKF2 412 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 PLEKHG5O94827 1062 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 DDX58O95786 925 aaKnown RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 PAFAH1B1P43034 410 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 BRD3Q15059 726 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 ARHGAP45Q92619 1136 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 CTAGE1Q96RT6 745 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 USO1O60763 962 aaKnown RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 KANK3Q6NY19 840 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 SEPT14Q6ZU15 432 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 LMNTD2Q8IXW0 634 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 NCAPD3P42695 1498 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 THOC2Q8NI27 1593 aaKnown RBP5.42□□□□□ -1.54
SCN1A-220ENST00000641603 ODF2Q5BJF6 829 aa5.42□□□□□ -1.54
SCN1A-220ENST00000641603 CTAGE15A4D2H0 777 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 URI1O94763 535 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CTAGE8P0CG41 777 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CTAGE6Q86UF2 777 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CTAGE4Q8IX94 777 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 MED4Q9NPJ6 270 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 IFFO1Q0D2I5 559 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 HOOK3Q86VS8 718 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 FAM76AQ8TAV0 307 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CEP131Q9UPN4 1083 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 NPHP3Q7Z494 1330 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 SUPT6HQ7KZ85 1726 aaKnown RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 ZBTB17Q13105 803 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 ENOX2Q16206 610 aaKnown RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CHMP7Q8WUX9 453 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 RPGRIP1LQ68CZ1 1315 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 HSF2BPO75031 334 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CENPHQ9H3R5 247 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 WIZO95785 1651 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 RPRD2Q5VT52 1461 aaKnown RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 ZFYP08048 801 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 PPP2R1AP30153 589 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 EFCAB2Q5VUJ9 269 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 ARMC9Q7Z3E5 817 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 ANKRD36BQ8N2N9 1353 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CCDC40Q4G0X9 1142 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 DDX46Q7L014 1031 aaKnown RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CACNA2D4Q7Z3S7 1137 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 RALYLQ86SE5 291 aaKnown RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 APBB1O00213 710 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 SART3Q15020 963 aaKnown RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 APLFQ8IW19 511 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 ERBINQ96RT1 1412 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 APBA1Q02410 837 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 MAP2K1Q02750 393 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-220ENST00000641603 SPA17Q15506 151 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 RSPH14Q9UHP6 348 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 CEP83Q9Y592 693 aa5.41□□□□□ -1.54
SCN1A-220ENST00000641603 ARAP1Q96P48 1450 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 ZNF165P49910 485 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 IFI16Q16666 785 aaKnown RBP5.4□□□□□ -1.54
SCN1A-220ENST00000641603 TSNAXIP1Q2TAA8 658 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 RAB11FIP3O75154 756 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 C8orf34Q49A92 452 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 C10orf67Q8IYJ2 551 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 YEATS4O95619 227 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 FGFR1OPO95684 399 aaKnown RBP5.4□□□□□ -1.54
SCN1A-220ENST00000641603 NEDD9Q14511 834 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 MICALL1Q8N3F8 863 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 FAM184BQ9ULE4 1060 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.4□□□□□ -1.54
SCN1A-220ENST00000641603 PPFIA4O75335 1185 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 KIF4BQ2VIQ3 1234 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 RBM26Q5T8P6 1007 aaKnown RBP5.4□□□□□ -1.54
SCN1A-220ENST00000641603 VPS36Q86VN1 386 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 GBP7Q8N8V2 638 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-220ENST00000641603 ERICH2A1L162 156 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 INPP5BP32019 993 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 GPR161Q8N6U8 529 aaKnown RBP5.4□□□□□ -1.54
SCN1A-220ENST00000641603 PSMD1Q99460 953 aa5.4□□□□□ -1.54
SCN1A-220ENST00000641603 NUP160Q12769 1436 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 CLUL1Q15846 466 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 CLASRPQ8N2M8 674 aaKnown RBP5.4□□□□□ -1.55
SCN1A-220ENST00000641603 ANKRD50Q9ULJ7 1429 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 GIGYF1O75420 1035 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-220ENST00000641603 SKILP12757 684 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 SLC20A2Q08357 652 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 IQCDQ96DY2 449 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 LIMCH1Q9UPQ0 1083 aa5.4□□□□□ -1.55
SCN1A-220ENST00000641603 NAP1L1P55209 391 aaKnown RBP5.4□□□□□ -1.55
SCN1A-220ENST00000641603 LACTBP83111 547 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-220ENST00000641603 KLHL10Q6JEL2 608 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms