RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CCDC91Q7Z6B0 441 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 HACE1Q8IYU2 909 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 SHTN1A0MZ66 631 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 SARNPP82979 210 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 JDP2Q8WYK2 163 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 FAM184BQ9ULE4 1060 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 DDX49Q9Y6V7 483 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 MTIF3Q9H2K0 278 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 CCDC18Q5T9S5 1454 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 UNC13CQ8NB66 2214 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 EP400NLQ6ZTU2 488 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 TAX1BP1Q86VP1 789 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 NGEFQ8N5V2 710 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 CGNQ9P2M7 1197 aaKnown RBP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 TFIP11Q9UBB9 837 aaKnown RBP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 ODF2LQ9ULJ1 636 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 GAS8O95995 478 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 MUM1L1Q5H9M0 696 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 MRVI1Q9Y6F6 885 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 EVC2Q86UK5 1308 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 RAB34Q9BZG1 259 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 KTN1Q86UP2 1357 aaKnown RBP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 ZNF197O14709 1029 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 CCDC172P0C7W6 258 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 THEMISQ8N1K5 641 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 TIGD1Q96MW7 591 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 CERS3Q8IU89 383 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 TCHPQ9BT92 498 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 STXBP4Q6ZWJ1 553 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 BCL11BQ9C0K0 894 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 CNOT7Q9UIV1 285 aaKnown RBP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 MYH13Q9UKX3 1938 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 ERLIN1O75477 346 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 MIPOL1Q8TD10 442 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 STK26Q9P289 416 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 TDRD6O60522 2096 aaKnown RBP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 SMTNL1A8MU46 457 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 ZPR1O75312 459 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 ZKSCAN1P17029 563 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 MATR3P43243 847 aaKnown RBP eCLIP3.23□□□□□ -1.891e-10■■■■■ 37.8
SCN1A-219ENST00000641575 MCTP1Q6DN14 999 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 SEPT14Q6ZU15 432 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 PSMD1Q99460 953 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.23□□□□□ -1.89
SCN1A-219ENST00000641575 NBASA2RRP1 2371 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 TNNI2P48788 182 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 FOSBP53539 338 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 ANKRD45Q5TZF3 282 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 ZNF449Q6P9G9 518 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 PRDM10Q9NQV6 1147 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 TTC21AQ8NDW8 1320 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 SENP3-EIF4A1A0A087X0R7 540 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 CPLX1O14810 134 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 ZW10O43264 779 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 PPFIBP2Q8ND30 876 aa3.23□□□□□ -1.89
SCN1A-219ENST00000641575 GLRX3O76003 335 aaKnown RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 SKIDA1Q1XH10 827 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 NOL8Q76FK4 1167 aaKnown RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 RAB11FIP4Q86YS3 637 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ITPRIPQ8IWB1 547 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 TSNARE1Q96NA8 513 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 NOD1Q9Y239 953 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ANKRD62A6NC57 917 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 TRIM6-TRIM34B2RNG4 842 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 NPY2RP49146 381 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 SLC8A3P57103 927 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 CETN1Q12798 172 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 RALYLQ86SE5 291 aaKnown RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 NAP1L3Q99457 506 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 EVA1BQ9NVM1 165 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 FAM208BQ5VWN6 2430 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ATP5J2-PTCD1G3V325 749 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ARHGAP25P42331 645 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 RAI14Q9P0K7 980 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ZHX1Q9UKY1 873 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 SLC8A2Q9UPR5 921 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 KDM2AQ9Y2K7 1162 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 F8W8V4 182 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 KIF5CO60282 957 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 IBSPP21815 317 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 NFKBIAP25963 317 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ARID4AP29374 1257 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 MRE11P49959 708 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 MNAT1P51948 309 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 TAOK3Q9H2K8 898 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 CTR9Q6PD62 1173 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 GPHNQ9NQX3 736 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 STK25O00506 426 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 BPIFB4P59827 614 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 NUCB2P80303 420 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 OLFM4Q6UX06 510 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 PATL1Q86TB9 770 aaKnown RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 MYCNP04198 464 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 PPP2R5DQ14738 602 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 SYCE3A1L190 88 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 SMC1AQ14683 1233 aaKnown RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 HS6ST3Q8IZP7 471 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 RCAN3Q9UKA8 241 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 CGNL1Q0VF96 1302 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms