RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 IL13P35225 146 aa18.97■□□□□ 0.63
LINC00339-211ENST00000641009 SULT6B1Q6IMI4 303 aa18.97■□□□□ 0.63
LINC00339-211ENST00000641009 FLAD1Q8NFF5 587 aa18.97■□□□□ 0.63
LINC00339-211ENST00000641009 PER1O15534 1290 aaPredicted RBP18.96■□□□□ 0.63
LINC00339-211ENST00000641009 ITPK1Q13572 414 aa18.96■□□□□ 0.63
LINC00339-211ENST00000641009 NLGN2Q8NFZ4 835 aa18.96■□□□□ 0.63
LINC00339-211ENST00000641009 KDRP35968 1356 aa18.95■□□□□ 0.62
LINC00339-211ENST00000641009 HSP90AB1P08238 724 aaKnown RBP18.95■□□□□ 0.62
LINC00339-211ENST00000641009 ATP6V1AP38606 617 aa18.95■□□□□ 0.62
LINC00339-211ENST00000641009 AMOTQ4VCS5 1084 aa18.95■□□□□ 0.62
LINC00339-211ENST00000641009 DCAF5Q96JK2 942 aa18.95■□□□□ 0.62
LINC00339-211ENST00000641009 ERVV-2B6SEH9 535 aa18.94■□□□□ 0.62
LINC00339-211ENST00000641009 MTHFSP49914 203 aa18.94■□□□□ 0.62
LINC00339-211ENST00000641009 CC2D1BQ5T0F9 858 aaKnown RBP18.94■□□□□ 0.62
LINC00339-211ENST00000641009 MYH14Q7Z406 1995 aaKnown RBP18.93■□□□□ 0.62
LINC00339-211ENST00000641009 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.93■□□□□ 0.62
LINC00339-211ENST00000641009 GPR162Q16538 588 aa18.93■□□□□ 0.62
LINC00339-211ENST00000641009 C1orf141Q5JVX7 400 aa18.92■□□□□ 0.62
LINC00339-211ENST00000641009 PELP1Q8IZL8 1130 aaKnown RBP18.92■□□□□ 0.62
LINC00339-211ENST00000641009 GNPATO15228 680 aa18.91■□□□□ 0.62
LINC00339-211ENST00000641009 SSFA2P28290 1259 aa18.9■□□□□ 0.62
LINC00339-211ENST00000641009 CABP4P57796 275 aa18.9■□□□□ 0.62
LINC00339-211ENST00000641009 CNGB1Q14028 1251 aaPredicted RBP18.9■□□□□ 0.62
LINC00339-211ENST00000641009 SLC4A9Q96Q91 983 aa18.9■□□□□ 0.62
LINC00339-211ENST00000641009 RBM42Q9BTD8 480 aaKnown RBP18.9■□□□□ 0.62
LINC00339-211ENST00000641009 HMOX1P09601 288 aa18.89■□□□□ 0.61
LINC00339-211ENST00000641009 C4AP0C0L4 1744 aa18.89■□□□□ 0.61
LINC00339-211ENST00000641009 TJP1Q07157 1748 aa18.89■□□□□ 0.61
LINC00339-211ENST00000641009 NFATC2IPQ8NCF5 419 aa18.87■□□□□ 0.61
LINC00339-211ENST00000641009 ZNF784Q8NCA9 323 aaPredicted RBP18.86■□□□□ 0.61
LINC00339-211ENST00000641009 CICQ96RK0 1608 aaPredicted RBP18.85■□□□□ 0.61
LINC00339-211ENST00000641009 DIAPH1O60610 1272 aaKnown RBP18.85■□□□□ 0.61
LINC00339-211ENST00000641009 YBX3P16989 372 aaKnown RBP eCLIP18.85■□□□□ 0.61
LINC00339-211ENST00000641009 CD2APQ9Y5K6 639 aa18.85■□□□□ 0.61
LINC00339-211ENST00000641009 NPC1L1Q9UHC9 1359 aa18.85■□□□□ 0.61
LINC00339-211ENST00000641009 COL3A1P02461 1466 aaPredicted RBP18.85■□□□□ 0.61
LINC00339-211ENST00000641009 ADAMTS7Q9UKP4 1686 aa18.84■□□□□ 0.61
LINC00339-211ENST00000641009 PTCD1O75127 700 aaKnown RBP18.84■□□□□ 0.61
LINC00339-211ENST00000641009 AKAP4Q5JQC9 854 aa18.84■□□□□ 0.61
LINC00339-211ENST00000641009 KIF13BQ9NQT8 1826 aa18.84■□□□□ 0.61
LINC00339-211ENST00000641009 RTCBQ9Y3I0 505 aaKnown RBP18.84■□□□□ 0.61
LINC00339-211ENST00000641009 LGR6Q9HBX8 967 aa18.83■□□□□ 0.6
LINC00339-211ENST00000641009 CNTNAP4Q9C0A0 1308 aa18.82■□□□□ 0.6
LINC00339-211ENST00000641009 N4BP2Q86UW6 1770 aaPredicted RBP18.82■□□□□ 0.6
LINC00339-211ENST00000641009 TRAPPC3LQ5T215 181 aa18.82■□□□□ 0.6
LINC00339-211ENST00000641009 RC3H1Q5TC82 1133 aaKnown RBP18.82■□□□□ 0.6
LINC00339-211ENST00000641009 MRC1P22897 1456 aa18.81■□□□□ 0.6
LINC00339-211ENST00000641009 MTHFSDQ2M296 383 aaKnown RBP18.81■□□□□ 0.6
LINC00339-211ENST00000641009 KIAA1551Q9HCM1 1747 aa18.8■□□□□ 0.6
LINC00339-211ENST00000641009 ARHGEF1Q92888 912 aaKnown RBP18.8■□□□□ 0.6
LINC00339-211ENST00000641009 SLC52A2Q9HAB3 445 aa18.8■□□□□ 0.6
LINC00339-211ENST00000641009 UBR2Q8IWV8 1755 aa18.8■□□□□ 0.6
LINC00339-211ENST00000641009 RNMTO43148 476 aaKnown RBP18.79■□□□□ 0.6
LINC00339-211ENST00000641009 RPS6KA4O75676 772 aa18.79■□□□□ 0.6
LINC00339-211ENST00000641009 MMP10P09238 476 aa18.79■□□□□ 0.6
LINC00339-211ENST00000641009 U2SURPO15042 1029 aaKnown RBP18.78■□□□□ 0.6
LINC00339-211ENST00000641009 GRIN3BO60391 1043 aa18.78■□□□□ 0.6
LINC00339-211ENST00000641009 ADRA2BP18089 450 aa18.78■□□□□ 0.6
LINC00339-211ENST00000641009 WWC3Q9ULE0 1092 aa18.78■□□□□ 0.6
LINC00339-211ENST00000641009 SIPA1L3O60292 1781 aaPredicted RBP18.78■□□□□ 0.6
LINC00339-211ENST00000641009 CRKLP46109 303 aaKnown RBP18.77■□□□□ 0.6
LINC00339-211ENST00000641009 KCPQ6ZWJ8 1503 aa18.77■□□□□ 0.6
LINC00339-211ENST00000641009 RFC4P35249 363 aa18.77■□□□□ 0.59
LINC00339-211ENST00000641009 SLC39A6Q13433 755 aa18.77■□□□□ 0.59
LINC00339-211ENST00000641009 GYS1P13807 737 aa18.76■□□□□ 0.59
LINC00339-211ENST00000641009 BRCA1P38398 1863 aaKnown RBP18.75■□□□□ 0.59
LINC00339-211ENST00000641009 NLGN1Q8N2Q7 840 aa18.75■□□□□ 0.59
LINC00339-211ENST00000641009 DNAJC10Q8IXB1 793 aa18.74■□□□□ 0.59
LINC00339-211ENST00000641009 INTS5Q6P9B9 1019 aaKnown RBP18.73■□□□□ 0.59
LINC00339-211ENST00000641009 SRP68Q9UHB9 627 aaKnown RBP18.73■□□□□ 0.59
LINC00339-211ENST00000641009 PXDNLA1KZ92 1463 aa18.72■□□□□ 0.59
LINC00339-211ENST00000641009 C10orf71Q711Q0 1435 aa18.72■□□□□ 0.59
LINC00339-211ENST00000641009 USP42Q9H9J4 1324 aaKnown RBP18.71■□□□□ 0.59
LINC00339-211ENST00000641009 CFAP53Q96M91 514 aa18.71■□□□□ 0.59
LINC00339-211ENST00000641009 CCDC87Q9NVE4 849 aa18.71■□□□□ 0.59
LINC00339-211ENST00000641009 AFDNP55196 1824 aaKnown RBP18.7■□□□□ 0.58
LINC00339-211ENST00000641009 CYP19A1P11511 503 aaPredicted RBP18.7■□□□□ 0.58
LINC00339-211ENST00000641009 GAS2L2Q8NHY3 880 aa18.7■□□□□ 0.58
LINC00339-211ENST00000641009 PARP3Q9Y6F1 533 aa18.7■□□□□ 0.58
LINC00339-211ENST00000641009 GNAT3A8MTJ3 354 aa18.69■□□□□ 0.58
LINC00339-211ENST00000641009 PPP2R1AP30153 589 aa18.69■□□□□ 0.58
LINC00339-211ENST00000641009 FKBP8Q14318 412 aa18.69■□□□□ 0.58
LINC00339-211ENST00000641009 IL17REQ8NFR9 667 aa18.69■□□□□ 0.58
LINC00339-211ENST00000641009 SOS1Q07889 1333 aaPredicted RBP18.68■□□□□ 0.58
LINC00339-211ENST00000641009 PRKAR2BP31323 418 aa18.68■□□□□ 0.58
LINC00339-211ENST00000641009 PHACTR3Q96KR7 559 aa18.68■□□□□ 0.58
LINC00339-211ENST00000641009 RSPH6AQ9H0K4 717 aa18.68■□□□□ 0.58
LINC00339-211ENST00000641009 ARFGEF1Q9Y6D6 1849 aa18.68■□□□□ 0.58
LINC00339-211ENST00000641009 A0A0G2JLW4 131 aa18.67■□□□□ 0.58
LINC00339-211ENST00000641009 TGFB2P61812 414 aa18.67■□□□□ 0.58
LINC00339-211ENST00000641009 TEFQ10587 303 aa18.66■□□□□ 0.58
LINC00339-211ENST00000641009 TTC5Q8N0Z6 440 aa18.66■□□□□ 0.58
LINC00339-211ENST00000641009 VSIG10Q8N0Z9 540 aa18.66■□□□□ 0.58
LINC00339-211ENST00000641009 ZBTB1Q9Y2K1 713 aa18.66■□□□□ 0.58
LINC00339-211ENST00000641009 DLG5Q8TDM6 1919 aa18.66■□□□□ 0.58
LINC00339-211ENST00000641009 ATP10DQ9P241 1426 aa18.65■□□□□ 0.58
LINC00339-211ENST00000641009 DDR1Q08345 913 aa18.65■□□□□ 0.58
LINC00339-211ENST00000641009 USPL1Q5W0Q7 1092 aa18.65■□□□□ 0.58
LINC00339-211ENST00000641009 COL15A1P39059 1388 aa18.65■□□□□ 0.58
LINC00339-211ENST00000641009 ZPR1O75312 459 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms