RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 ROBO1Q9Y6N7 1651 aa18.99■□□□□ 0.63
TRIM3-215ENST00000639856 RNMTO43148 476 aaKnown RBP18.98■□□□□ 0.63
TRIM3-215ENST00000639856 SLC4A2P04920 1241 aa18.98■□□□□ 0.63
TRIM3-215ENST00000639856 BABAM1Q9NWV8 329 aa18.98■□□□□ 0.63
TRIM3-215ENST00000639856 SLC4A3P48751 1232 aa18.97■□□□□ 0.63
TRIM3-215ENST00000639856 KCNQ3O43525 872 aa18.97■□□□□ 0.63
TRIM3-215ENST00000639856 NUCB1Q02818 461 aa18.97■□□□□ 0.63
TRIM3-215ENST00000639856 NECTIN2Q92692 538 aa18.97■□□□□ 0.63
TRIM3-215ENST00000639856 TEFQ10587 303 aa18.96■□□□□ 0.63
TRIM3-215ENST00000639856 RTL5Q5HYW3 569 aaPredicted RBP18.96■□□□□ 0.63
TRIM3-215ENST00000639856 G2E3Q7L622 706 aa18.96■□□□□ 0.63
TRIM3-215ENST00000639856 UPF2Q9HAU5 1272 aaKnown RBP18.96■□□□□ 0.63
TRIM3-215ENST00000639856 TATP17735 454 aaPredicted RBP18.95■□□□□ 0.62
TRIM3-215ENST00000639856 ADAMTS7Q9UKP4 1686 aa18.95■□□□□ 0.62
TRIM3-215ENST00000639856 COL5A2P05997 1499 aaPredicted RBP18.95■□□□□ 0.62
TRIM3-215ENST00000639856 SIPA1L3O60292 1781 aaPredicted RBP18.94■□□□□ 0.62
TRIM3-215ENST00000639856 OVOS2A0A0G2JMS6 1433 aa18.94■□□□□ 0.62
TRIM3-215ENST00000639856 C1orf115Q9H7X2 142 aa18.94■□□□□ 0.62
TRIM3-215ENST00000639856 PTPRCP08575 1304 aa18.93■□□□□ 0.62
TRIM3-215ENST00000639856 BTBD11A6QL63 1104 aa18.93■□□□□ 0.62
TRIM3-215ENST00000639856 EIF4A1P60842 406 aaKnown RBP18.93■□□□□ 0.62
TRIM3-215ENST00000639856 GCC1Q96CN9 775 aa18.93■□□□□ 0.62
TRIM3-215ENST00000639856 PKD1L3Q7Z443 1732 aa18.93■□□□□ 0.62
TRIM3-215ENST00000639856 WDR17Q8IZU2 1322 aa18.93■□□□□ 0.62
TRIM3-215ENST00000639856 CHD1LQ86WJ1 897 aa18.92■□□□□ 0.62
TRIM3-215ENST00000639856 USP35Q9P2H5 1018 aa18.92■□□□□ 0.62
TRIM3-215ENST00000639856 KDM6AO15550 1401 aaPredicted RBP18.92■□□□□ 0.62
TRIM3-215ENST00000639856 SCN11AQ9UI33 1791 aa18.92■□□□□ 0.62
TRIM3-215ENST00000639856 TBC1D32Q96NH3 1257 aa18.92■□□□□ 0.62
TRIM3-215ENST00000639856 STK31Q9BXU1 1019 aa18.92■□□□□ 0.62
TRIM3-215ENST00000639856 CCDC30Q5VVM6 783 aa18.91■□□□□ 0.62
TRIM3-215ENST00000639856 INTS3Q68E01 1043 aaKnown RBP18.91■□□□□ 0.62
TRIM3-215ENST00000639856 SPG7Q9UQ90 795 aa18.91■□□□□ 0.62
TRIM3-215ENST00000639856 PHKG2P15735 406 aa18.91■□□□□ 0.62
TRIM3-215ENST00000639856 TOM1L2Q6ZVM7 507 aa18.91■□□□□ 0.62
TRIM3-215ENST00000639856 LNPKQ9C0E8 428 aa18.91■□□□□ 0.62
TRIM3-215ENST00000639856 F6X3S4 739 aa18.9■□□□□ 0.62
TRIM3-215ENST00000639856 SIRT2Q8IXJ6 389 aa18.9■□□□□ 0.62
TRIM3-215ENST00000639856 CACNA1FO60840 1977 aa18.9■□□□□ 0.62
TRIM3-215ENST00000639856 AHDC1Q5TGY3 1603 aaPredicted RBP18.9■□□□□ 0.62
TRIM3-215ENST00000639856 CYP27B1O15528 508 aa18.89■□□□□ 0.62
TRIM3-215ENST00000639856 HDGFL1Q5TGJ6 251 aa18.89■□□□□ 0.62
TRIM3-215ENST00000639856 STRN4Q9NRL3 753 aa18.89■□□□□ 0.62
TRIM3-215ENST00000639856 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.89■□□□□ 0.62
TRIM3-215ENST00000639856 SOS1Q07889 1333 aaPredicted RBP18.89■□□□□ 0.61
TRIM3-215ENST00000639856 EIF2S2P20042 333 aaKnown RBP18.88■□□□□ 0.61
TRIM3-215ENST00000639856 FLIIQ13045 1269 aa18.88■□□□□ 0.61
TRIM3-215ENST00000639856 LARP1Q6PKG0 1096 aaKnown RBP18.88■□□□□ 0.61
TRIM3-215ENST00000639856 PARP4Q9UKK3 1724 aaKnown RBP18.87■□□□□ 0.61
TRIM3-215ENST00000639856 BECN1Q14457 450 aa18.87■□□□□ 0.61
TRIM3-215ENST00000639856 ANKRD45Q5TZF3 282 aa18.87■□□□□ 0.61
TRIM3-215ENST00000639856 IFNL2Q8IZJ0 200 aa18.87■□□□□ 0.61
TRIM3-215ENST00000639856 SLC4A10Q6U841 1118 aa18.86■□□□□ 0.61
TRIM3-215ENST00000639856 DEKP35659 375 aaKnown RBP18.85■□□□□ 0.61
TRIM3-215ENST00000639856 FKBP5Q13451 457 aaPredicted RBP18.85■□□□□ 0.61
TRIM3-215ENST00000639856 SLC52A2Q9HAB3 445 aa18.85■□□□□ 0.61
TRIM3-215ENST00000639856 PLEKHG2Q9H7P9 1386 aa18.85■□□□□ 0.61
TRIM3-215ENST00000639856 PRAMEF22A3QJZ6 481 aa18.85■□□□□ 0.61
TRIM3-215ENST00000639856 PHAXQ9H814 394 aaKnown RBP18.85■□□□□ 0.61
TRIM3-215ENST00000639856 HOXB7P09629 217 aa18.84■□□□□ 0.61
TRIM3-215ENST00000639856 EVA1CP58658 441 aa18.84■□□□□ 0.61
TRIM3-215ENST00000639856 SLC39A6Q13433 755 aa18.84■□□□□ 0.61
TRIM3-215ENST00000639856 NFATC2IPQ8NCF5 419 aa18.84■□□□□ 0.61
TRIM3-215ENST00000639856 CHPF2Q9P2E5 772 aa18.84■□□□□ 0.61
TRIM3-215ENST00000639856 COL22A1Q8NFW1 1626 aaPredicted RBP18.84■□□□□ 0.61
TRIM3-215ENST00000639856 BMP2KLQ5H9B9 411 aa18.83■□□□□ 0.61
TRIM3-215ENST00000639856 MEIS3Q99687 375 aa18.83■□□□□ 0.61
TRIM3-215ENST00000639856 CARD10Q9BWT7 1032 aa18.83■□□□□ 0.61
TRIM3-215ENST00000639856 HEG1Q9ULI3 1381 aa18.83■□□□□ 0.61
TRIM3-215ENST00000639856 DCAF5Q96JK2 942 aa18.83■□□□□ 0.6
TRIM3-215ENST00000639856 GIGYF1O75420 1035 aaPredicted RBP18.82■□□□□ 0.6
TRIM3-215ENST00000639856 ANXA1P04083 346 aa18.82■□□□□ 0.6
TRIM3-215ENST00000639856 BTG4Q9NY30 223 aa18.82■□□□□ 0.6
TRIM3-215ENST00000639856 ATP10DQ9P241 1426 aa18.82■□□□□ 0.6
TRIM3-215ENST00000639856 MRC1P22897 1456 aa18.82■□□□□ 0.6
TRIM3-215ENST00000639856 COL16A1Q07092 1604 aaPredicted RBP18.82■□□□□ 0.6
TRIM3-215ENST00000639856 PHLPP1O60346 1717 aa18.82■□□□□ 0.6
TRIM3-215ENST00000639856 SHANK3Q9BYB0 1731 aa18.82■□□□□ 0.6
TRIM3-215ENST00000639856 MFAP1P55081 439 aaKnown RBP18.82■□□□□ 0.6
TRIM3-215ENST00000639856 C22orf23Q9BZE7 217 aa18.82■□□□□ 0.6
TRIM3-215ENST00000639856 NFKBIBQ15653 356 aa18.81■□□□□ 0.6
TRIM3-215ENST00000639856 ZNF790Q6PG37 636 aa18.81■□□□□ 0.6
TRIM3-215ENST00000639856 ANKRD44Q8N8A2 993 aa18.81■□□□□ 0.6
TRIM3-215ENST00000639856 C5P01031 1676 aa18.81■□□□□ 0.6
TRIM3-215ENST00000639856 IL2RBP14784 551 aa18.8■□□□□ 0.6
TRIM3-215ENST00000639856 RPAP2Q8IXW5 612 aaPredicted RBP18.8■□□□□ 0.6
TRIM3-215ENST00000639856 ZCRB1Q8TBF4 217 aaKnown RBP18.8■□□□□ 0.6
TRIM3-215ENST00000639856 DCTPP1Q9H773 170 aa18.8■□□□□ 0.6
TRIM3-215ENST00000639856 COL14A1Q05707 1796 aaKnown RBP18.8■□□□□ 0.6
TRIM3-215ENST00000639856 N4BP2Q86UW6 1770 aaPredicted RBP18.8■□□□□ 0.6
TRIM3-215ENST00000639856 CCT4P50991 539 aaKnown RBP18.8■□□□□ 0.6
TRIM3-215ENST00000639856 PCDH11XQ9BZA7 1347 aa18.79■□□□□ 0.6
TRIM3-215ENST00000639856 PCDH11YQ9BZA8 1340 aa18.79■□□□□ 0.6
TRIM3-215ENST00000639856 PIP4K2BP78356 416 aa18.79■□□□□ 0.6
TRIM3-215ENST00000639856 HSP90AB1P08238 724 aaKnown RBP18.78■□□□□ 0.6
TRIM3-215ENST00000639856 PROSER3Q2NL68 480 aa18.78■□□□□ 0.6
TRIM3-215ENST00000639856 CEP85Q6P2H3 762 aa18.78■□□□□ 0.6
TRIM3-215ENST00000639856 TBC1D2Q9BYX2 928 aa18.77■□□□□ 0.6
TRIM3-215ENST00000639856 CABP4P57796 275 aa18.76■□□□□ 0.59
TRIM3-215ENST00000639856 DDX54Q8TDD1 881 aaKnown RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms