RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 NKX1-1Q15270 411 aaPredicted RBP23.05■■□□□ 1.28
CLN3-264ENST00000637985 KDM2BQ8NHM5 1336 aa23.04■■□□□ 1.28
CLN3-264ENST00000637985 KCPQ6ZWJ8 1503 aa23.03■■□□□ 1.28
CLN3-264ENST00000637985 NLGN1Q8N2Q7 840 aa23.03■■□□□ 1.28
CLN3-264ENST00000637985 CARD11Q9BXL7 1154 aa23.03■■□□□ 1.28
CLN3-264ENST00000637985 INSRP06213 1382 aa23.02■■□□□ 1.28
CLN3-264ENST00000637985 HSP90AB2PQ58FF8 381 aa23.02■■□□□ 1.28
CLN3-264ENST00000637985 ARFGEF1Q9Y6D6 1849 aa23.01■■□□□ 1.27
CLN3-264ENST00000637985 KCNA3P22001 575 aa23.01■■□□□ 1.27
CLN3-264ENST00000637985 ATP6V1AP38606 617 aa23.01■■□□□ 1.27
CLN3-264ENST00000637985 TMF1P82094 1093 aa23.01■■□□□ 1.27
CLN3-264ENST00000637985 RRAGCQ9HB90 399 aa23.01■■□□□ 1.27
CLN3-264ENST00000637985 PKD1L3Q7Z443 1732 aa23.01■■□□□ 1.27
CLN3-264ENST00000637985 CCDC87Q9NVE4 849 aa23■■□□□ 1.27
CLN3-264ENST00000637985 ASAP1Q9ULH1 1129 aa23■■□□□ 1.27
CLN3-264ENST00000637985 TRAPPC3LQ5T215 181 aa22.99■■□□□ 1.27
CLN3-264ENST00000637985 SMC1BQ8NDV3 1235 aa22.99■■□□□ 1.27
CLN3-264ENST00000637985 FYB1O15117 783 aa22.98■■□□□ 1.27
CLN3-264ENST00000637985 HSPA1AP0DMV8 641 aaKnown RBP22.98■■□□□ 1.27
CLN3-264ENST00000637985 HSPA1BP0DMV9 641 aaKnown RBP22.98■■□□□ 1.27
CLN3-264ENST00000637985 NEUROD1Q13562 356 aa22.98■■□□□ 1.27
CLN3-264ENST00000637985 C4AP0C0L4 1744 aa22.98■■□□□ 1.27
CLN3-264ENST00000637985 DCAF5Q96JK2 942 aa22.97■■□□□ 1.27
CLN3-264ENST00000637985 TMOD3Q9NYL9 352 aa22.97■■□□□ 1.27
CLN3-264ENST00000637985 TNRC6CQ9HCJ0 1690 aaKnown RBP22.97■■□□□ 1.27
CLN3-264ENST00000637985 GGNBP2Q9H3C7 697 aa22.96■■□□□ 1.27
CLN3-264ENST00000637985 RTCBQ9Y3I0 505 aaKnown RBP22.96■■□□□ 1.27
CLN3-264ENST00000637985 FLT4P35916 1363 aa22.96■■□□□ 1.27
CLN3-264ENST00000637985 KIF24Q5T7B8 1368 aa22.95■■□□□ 1.26
CLN3-264ENST00000637985 RNF181Q9P0P0 153 aa22.95■■□□□ 1.26
CLN3-264ENST00000637985 PIM2Q9P1W9 311 aa22.95■■□□□ 1.26
CLN3-264ENST00000637985 GYS1P13807 737 aa22.94■■□□□ 1.26
CLN3-264ENST00000637985 ARHGEF1Q92888 912 aaKnown RBP22.94■■□□□ 1.26
CLN3-264ENST00000637985 ATG3Q9NT62 314 aa22.94■■□□□ 1.26
CLN3-264ENST00000637985 SPG7Q9UQ90 795 aa22.94■■□□□ 1.26
CLN3-264ENST00000637985 NCAPD2Q15021 1401 aa22.93■■□□□ 1.26
CLN3-264ENST00000637985 ADRA2BP18089 450 aa22.93■■□□□ 1.26
CLN3-264ENST00000637985 TESK2Q96S53 571 aa22.93■■□□□ 1.26
CLN3-264ENST00000637985 PARP3Q9Y6F1 533 aa22.93■■□□□ 1.26
CLN3-264ENST00000637985 SBF1O95248 1867 aa22.93■■□□□ 1.26
CLN3-264ENST00000637985 DALRD3Q5D0E6 543 aaKnown RBP22.92■■□□□ 1.26
CLN3-264ENST00000637985 KDRP35968 1356 aa22.91■■□□□ 1.26
CLN3-264ENST00000637985 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.91■■□□□ 1.26
CLN3-264ENST00000637985 RC3H1Q5TC82 1133 aaKnown RBP22.9■■□□□ 1.26
CLN3-264ENST00000637985 SLC4A9Q96Q91 983 aa22.9■■□□□ 1.26
CLN3-264ENST00000637985 RFC4P35249 363 aa22.89■■□□□ 1.25
CLN3-264ENST00000637985 TRIM26Q12899 539 aaPredicted RBP22.89■■□□□ 1.25
CLN3-264ENST00000637985 ZNF831Q5JPB2 1677 aa22.88■■□□□ 1.25
CLN3-264ENST00000637985 SLC34A2O95436 690 aa22.88■■□□□ 1.25
CLN3-264ENST00000637985 CNTNAP4Q9C0A0 1308 aa22.87■■□□□ 1.25
CLN3-264ENST00000637985 ZC3H4Q9UPT8 1303 aaKnown RBP22.87■■□□□ 1.25
CLN3-264ENST00000637985 RPS6KA4O75676 772 aa22.87■■□□□ 1.25
CLN3-264ENST00000637985 PHKG2P15735 406 aa22.86■■□□□ 1.25
CLN3-264ENST00000637985 IFNL2Q8IZJ0 200 aa22.86■■□□□ 1.25
CLN3-264ENST00000637985 TONSLQ96HA7 1378 aa22.86■■□□□ 1.25
CLN3-264ENST00000637985 COL5A3P25940 1745 aaPredicted RBP22.85■■□□□ 1.25
CLN3-264ENST00000637985 VEGFAP15692 232 aaPredicted RBP22.85■■□□□ 1.25
CLN3-264ENST00000637985 SLC24A1O60721 1099 aa22.84■■□□□ 1.25
CLN3-264ENST00000637985 KDM6AO15550 1401 aaPredicted RBP22.83■■□□□ 1.25
CLN3-264ENST00000637985 ST20-MTHFSA0A0A6YYL1 179 aa22.83■■□□□ 1.25
CLN3-264ENST00000637985 CHRNA5P30532 468 aa22.83■■□□□ 1.25
CLN3-264ENST00000637985 EMILIN1Q9Y6C2 1016 aa22.83■■□□□ 1.25
CLN3-264ENST00000637985 MYH14Q7Z406 1995 aaKnown RBP22.83■■□□□ 1.24
CLN3-264ENST00000637985 GLTPD2A6NH11 291 aa22.82■■□□□ 1.24
CLN3-264ENST00000637985 DDR1Q08345 913 aa22.82■■□□□ 1.24
CLN3-264ENST00000637985 RBM42Q9BTD8 480 aaKnown RBP22.82■■□□□ 1.24
CLN3-264ENST00000637985 KIF20BQ96Q89 1820 aa22.81■■□□□ 1.24
CLN3-264ENST00000637985 EYA1Q99502 592 aa22.81■■□□□ 1.24
CLN3-264ENST00000637985 RASSF7Q02833 373 aa22.79■■□□□ 1.24
CLN3-264ENST00000637985 FKBP8Q14318 412 aa22.79■■□□□ 1.24
CLN3-264ENST00000637985 ERVV-2B6SEH9 535 aa22.78■■□□□ 1.24
CLN3-264ENST00000637985 SRP68Q9UHB9 627 aaKnown RBP22.78■■□□□ 1.24
CLN3-264ENST00000637985 WASHC2AQ641Q2 1341 aa22.78■■□□□ 1.24
CLN3-264ENST00000637985 LMNB1P20700 586 aa22.77■■□□□ 1.24
CLN3-264ENST00000637985 USP42Q9H9J4 1324 aaKnown RBP22.77■■□□□ 1.24
CLN3-264ENST00000637985 ANKRD26Q9UPS8 1709 aa22.75■■□□□ 1.23
CLN3-264ENST00000637985 POTECB2RU33 542 aa22.75■■□□□ 1.23
CLN3-264ENST00000637985 POLRMTO00411 1230 aaKnown RBP22.75■■□□□ 1.23
CLN3-264ENST00000637985 PPM1GO15355 546 aaPredicted RBP22.75■■□□□ 1.23
CLN3-264ENST00000637985 TM4SF1P30408 202 aa22.74■■□□□ 1.23
CLN3-264ENST00000637985 CRKLP46109 303 aaKnown RBP22.72■■□□□ 1.23
CLN3-264ENST00000637985 PRDM10Q9NQV6 1147 aa22.72■■□□□ 1.23
CLN3-264ENST00000637985 CREBZFQ9NS37 354 aa22.72■■□□□ 1.23
CLN3-264ENST00000637985 FOXN1O15353 648 aa22.71■■□□□ 1.23
CLN3-264ENST00000637985 HSP90AB1P08238 724 aaKnown RBP22.7■■□□□ 1.22
CLN3-264ENST00000637985 CARD14Q9BXL6 1004 aa22.7■■□□□ 1.22
CLN3-264ENST00000637985 MKRN1Q9UHC7 482 aaKnown RBP22.7■■□□□ 1.22
CLN3-264ENST00000637985 TIAM2Q8IVF5 1701 aa22.7■■□□□ 1.22
CLN3-264ENST00000637985 CCDC88AQ3V6T2 1871 aa22.7■■□□□ 1.22
CLN3-264ENST00000637985 ADAMTS7Q9UKP4 1686 aa22.68■■□□□ 1.22
CLN3-264ENST00000637985 PTCD1O75127 700 aaKnown RBP22.68■■□□□ 1.22
CLN3-264ENST00000637985 CABP4P57796 275 aa22.67■■□□□ 1.22
CLN3-264ENST00000637985 NFKBIEO00221 500 aa22.66■■□□□ 1.22
CLN3-264ENST00000637985 DPY19L2Q6NUT2 758 aa22.66■■□□□ 1.22
CLN3-264ENST00000637985 INTS5Q6P9B9 1019 aaKnown RBP22.66■■□□□ 1.22
CLN3-264ENST00000637985 TTLL6Q8N841 843 aa22.66■■□□□ 1.22
CLN3-264ENST00000637985 DLEC1Q9Y238 1755 aa22.66■■□□□ 1.22
CLN3-264ENST00000637985 CHADLQ6NUI6 762 aa22.65■■□□□ 1.22
CLN3-264ENST00000637985 POLKQ9UBT6 870 aa22.65■■□□□ 1.22
CLN3-264ENST00000637985 AFDNP55196 1824 aaKnown RBP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms