RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 EIF4A2Q14240 407 aaKnown RBP26.8■■□□□ 1.88
CLN3-262ENST00000637699 ADCY9O60503 1353 aa26.79■■□□□ 1.88
CLN3-262ENST00000637699 MMP10P09238 476 aa26.76■■□□□ 1.87
CLN3-262ENST00000637699 RBM42Q9BTD8 480 aaKnown RBP26.75■■□□□ 1.87
CLN3-262ENST00000637699 TRAPPC3LQ5T215 181 aa26.73■■□□□ 1.87
CLN3-262ENST00000637699 TIMELESSQ9UNS1 1208 aa26.73■■□□□ 1.87
CLN3-262ENST00000637699 RTCBQ9Y3I0 505 aaKnown RBP26.73■■□□□ 1.87
CLN3-262ENST00000637699 SLC4A9Q96Q91 983 aa26.72■■□□□ 1.87
CLN3-262ENST00000637699 ERVV-2B6SEH9 535 aa26.71■■□□□ 1.87
CLN3-262ENST00000637699 KDRP35968 1356 aa26.7■■□□□ 1.86
CLN3-262ENST00000637699 PLEKHO1Q53GL0 409 aaPredicted RBP26.69■■□□□ 1.86
CLN3-262ENST00000637699 NLGN1Q8N2Q7 840 aa26.69■■□□□ 1.86
CLN3-262ENST00000637699 DCAF5Q96JK2 942 aa26.69■■□□□ 1.86
CLN3-262ENST00000637699 HSP90AB1P08238 724 aaKnown RBP26.68■■□□□ 1.86
CLN3-262ENST00000637699 HSPA6P17066 643 aa26.68■■□□□ 1.86
CLN3-262ENST00000637699 ARHGEF1Q92888 912 aaKnown RBP26.68■■□□□ 1.86
CLN3-262ENST00000637699 A0A0G2JLW4 131 aa26.67■■□□□ 1.86
CLN3-262ENST00000637699 CABP4P57796 275 aa26.67■■□□□ 1.86
CLN3-262ENST00000637699 ZNF530Q6P9A1 599 aaPredicted RBP26.67■■□□□ 1.86
CLN3-262ENST00000637699 PXDNLA1KZ92 1463 aa26.67■■□□□ 1.86
CLN3-262ENST00000637699 CICQ96RK0 1608 aaPredicted RBP26.66■■□□□ 1.86
CLN3-262ENST00000637699 TGFB2P61812 414 aa26.66■■□□□ 1.86
CLN3-262ENST00000637699 RC3H1Q5TC82 1133 aaKnown RBP26.66■■□□□ 1.86
CLN3-262ENST00000637699 PANK3Q9H999 370 aa26.66■■□□□ 1.86
CLN3-262ENST00000637699 BCS1LQ9Y276 419 aa26.66■■□□□ 1.86
CLN3-262ENST00000637699 PLEKHG2Q9H7P9 1386 aa26.66■■□□□ 1.86
CLN3-262ENST00000637699 RFC4P35249 363 aa26.65■■□□□ 1.86
CLN3-262ENST00000637699 RPS6KA4O75676 772 aa26.64■■□□□ 1.86
CLN3-262ENST00000637699 ADRA2BP18089 450 aa26.64■■□□□ 1.86
CLN3-262ENST00000637699 IFFO2Q5TF58 517 aa26.64■■□□□ 1.86
CLN3-262ENST00000637699 CNTNAP4Q9C0A0 1308 aa26.64■■□□□ 1.85
CLN3-262ENST00000637699 N4BP2Q86UW6 1770 aaPredicted RBP26.63■■□□□ 1.85
CLN3-262ENST00000637699 KIF3CO14782 793 aa26.63■■□□□ 1.85
CLN3-262ENST00000637699 GYS1P13807 737 aa26.63■■□□□ 1.85
CLN3-262ENST00000637699 AMOTQ4VCS5 1084 aa26.63■■□□□ 1.85
CLN3-262ENST00000637699 PCGF6Q9BYE7 350 aa26.63■■□□□ 1.85
CLN3-262ENST00000637699 KDM6AO15550 1401 aaPredicted RBP26.63■■□□□ 1.85
CLN3-262ENST00000637699 KIF13BQ9NQT8 1826 aa26.62■■□□□ 1.85
CLN3-262ENST00000637699 PTCD1O75127 700 aaKnown RBP26.62■■□□□ 1.85
CLN3-262ENST00000637699 MTHFSP49914 203 aa26.62■■□□□ 1.85
CLN3-262ENST00000637699 CCDC87Q9NVE4 849 aa26.62■■□□□ 1.85
CLN3-262ENST00000637699 DPEP1P16444 411 aa26.61■■□□□ 1.85
CLN3-262ENST00000637699 ARHGAP27Q6ZUM4 889 aa26.61■■□□□ 1.85
CLN3-262ENST00000637699 AEBP1Q8IUX7 1158 aa26.61■■□□□ 1.85
CLN3-262ENST00000637699 PARP3Q9Y6F1 533 aa26.61■■□□□ 1.85
CLN3-262ENST00000637699 C10orf71Q711Q0 1435 aa26.61■■□□□ 1.85
CLN3-262ENST00000637699 KIAA1551Q9HCM1 1747 aa26.61■■□□□ 1.85
CLN3-262ENST00000637699 ZNF831Q5JPB2 1677 aa26.6■■□□□ 1.85
CLN3-262ENST00000637699 COL5A3P25940 1745 aaPredicted RBP26.6■■□□□ 1.85
CLN3-262ENST00000637699 HSPA5P11021 654 aaKnown RBP26.6■■□□□ 1.85
CLN3-262ENST00000637699 EIF4G2P78344 907 aaKnown RBP eCLIP26.6■■□□□ 1.851e-9■■■■□ 22.4
CLN3-262ENST00000637699 C1orf141Q5JVX7 400 aa26.6■■□□□ 1.85
CLN3-262ENST00000637699 MORC1Q86VD1 984 aa26.59■■□□□ 1.85
CLN3-262ENST00000637699 FCHSD2O94868 740 aa26.58■■□□□ 1.85
CLN3-262ENST00000637699 NFATC2IPQ8NCF5 419 aa26.58■■□□□ 1.85
CLN3-262ENST00000637699 C4AP0C0L4 1744 aa26.57■■□□□ 1.84
CLN3-262ENST00000637699 MYH14Q7Z406 1995 aaKnown RBP26.57■■□□□ 1.84
CLN3-262ENST00000637699 SULT6B1Q6IMI4 303 aa26.56■■□□□ 1.84
CLN3-262ENST00000637699 CLSPNQ9HAW4 1339 aa26.56■■□□□ 1.84
CLN3-262ENST00000637699 CRKLP46109 303 aaKnown RBP26.55■■□□□ 1.84
CLN3-262ENST00000637699 SRP68Q9UHB9 627 aaKnown RBP26.55■■□□□ 1.84
CLN3-262ENST00000637699 KCNA3P22001 575 aa26.53■■□□□ 1.84
CLN3-262ENST00000637699 FKBP8Q14318 412 aa26.52■■□□□ 1.84
CLN3-262ENST00000637699 TOMM70O94826 608 aa26.5■■□□□ 1.83
CLN3-262ENST00000637699 NMRK2Q9NPI5 230 aa26.5■■□□□ 1.83
CLN3-262ENST00000637699 PIM2Q9P1W9 311 aa26.5■■□□□ 1.83
CLN3-262ENST00000637699 USP42Q9H9J4 1324 aaKnown RBP26.49■■□□□ 1.83
CLN3-262ENST00000637699 IL13P35225 146 aa26.49■■□□□ 1.83
CLN3-262ENST00000637699 DDR1Q08345 913 aa26.48■■□□□ 1.83
CLN3-262ENST00000637699 C9orf131Q5VYM1 1079 aa26.48■■□□□ 1.83
CLN3-262ENST00000637699 KNSTRNQ9Y448 316 aa26.48■■□□□ 1.83
CLN3-262ENST00000637699 BRCA1P38398 1863 aaKnown RBP26.48■■□□□ 1.83
CLN3-262ENST00000637699 APLP1P51693 650 aa26.47■■□□□ 1.83
CLN3-262ENST00000637699 INTS5Q6P9B9 1019 aaKnown RBP26.47■■□□□ 1.83
CLN3-262ENST00000637699 DALRD3Q5D0E6 543 aaKnown RBP26.46■■□□□ 1.83
CLN3-262ENST00000637699 TJP1Q07157 1748 aa26.45■■□□□ 1.83
CLN3-262ENST00000637699 DNAJC10Q8IXB1 793 aa26.45■■□□□ 1.82
CLN3-262ENST00000637699 CHRNA5P30532 468 aa26.44■■□□□ 1.82
CLN3-262ENST00000637699 AKAP4Q5JQC9 854 aa26.44■■□□□ 1.82
CLN3-262ENST00000637699 LGR6Q9HBX8 967 aa26.44■■□□□ 1.82
CLN3-262ENST00000637699 SLC52A2Q9HAB3 445 aa26.43■■□□□ 1.82
CLN3-262ENST00000637699 SCN11AQ9UI33 1791 aa26.43■■□□□ 1.82
CLN3-262ENST00000637699 ARFGEF1Q9Y6D6 1849 aa26.42■■□□□ 1.82
CLN3-262ENST00000637699 POLRMTO00411 1230 aaKnown RBP26.42■■□□□ 1.82
CLN3-262ENST00000637699 ZPR1O75312 459 aa26.42■■□□□ 1.82
CLN3-262ENST00000637699 TM4SF1P30408 202 aa26.41■■□□□ 1.82
CLN3-262ENST00000637699 USPL1Q5W0Q7 1092 aa26.41■■□□□ 1.82
CLN3-262ENST00000637699 HMOX1P09601 288 aa26.4■■□□□ 1.82
CLN3-262ENST00000637699 SLC39A6Q13433 755 aa26.4■■□□□ 1.82
CLN3-262ENST00000637699 C16orf71Q8IYS4 520 aaPredicted RBP26.4■■□□□ 1.82
CLN3-262ENST00000637699 RNF181Q9P0P0 153 aa26.4■■□□□ 1.82
CLN3-262ENST00000637699 DNAJC5GQ8N7S2 189 aa26.39■■□□□ 1.82
CLN3-262ENST00000637699 RNMTO43148 476 aaKnown RBP26.38■■□□□ 1.81
CLN3-262ENST00000637699 CYP19A1P11511 503 aaPredicted RBP26.38■■□□□ 1.81
CLN3-262ENST00000637699 AMER1Q5JTC6 1135 aaPredicted RBP26.38■■□□□ 1.81
CLN3-262ENST00000637699 SOS1Q07889 1333 aaPredicted RBP26.38■■□□□ 1.81
CLN3-262ENST00000637699 RBM46Q8TBY0 533 aaKnown RBP26.37■■□□□ 1.81
CLN3-262ENST00000637699 ADAMTS7Q9UKP4 1686 aa26.37■■□□□ 1.81
CLN3-262ENST00000637699 KDM2BQ8NHM5 1336 aa26.36■■□□□ 1.81
CLN3-262ENST00000637699 KCPQ6ZWJ8 1503 aa26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms