RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 MAP3K5Q99683 1374 aa25.59■■□□□ 1.69
CLN6-221ENST00000637494 RBM42Q9BTD8 480 aaKnown RBP25.57■■□□□ 1.68
CLN6-221ENST00000637494 PHF14O94880 888 aa25.56■■□□□ 1.68
CLN6-221ENST00000637494 HMOX1P09601 288 aa25.56■■□□□ 1.68
CLN6-221ENST00000637494 YY1P25490 414 aa25.56■■□□□ 1.68
CLN6-221ENST00000637494 KDM6AO15550 1401 aaPredicted RBP25.55■■□□□ 1.68
CLN6-221ENST00000637494 COL24A1Q17RW2 1714 aa25.55■■□□□ 1.68
CLN6-221ENST00000637494 AKAP4Q5JQC9 854 aa25.55■■□□□ 1.68
CLN6-221ENST00000637494 LINC00116Q8NCU8 138 aa25.55■■□□□ 1.68
CLN6-221ENST00000637494 SSFA2P28290 1259 aa25.54■■□□□ 1.68
CLN6-221ENST00000637494 MSL1Q68DK7 614 aa25.54■■□□□ 1.68
CLN6-221ENST00000637494 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.53■■□□□ 1.68
CLN6-221ENST00000637494 CFAP53Q96M91 514 aa25.53■■□□□ 1.68
CLN6-221ENST00000637494 U2SURPO15042 1029 aaKnown RBP25.52■■□□□ 1.68
CLN6-221ENST00000637494 GNPATO15228 680 aa25.52■■□□□ 1.68
CLN6-221ENST00000637494 ITPK1Q13572 414 aa25.52■■□□□ 1.68
CLN6-221ENST00000637494 NFATC2IPQ8NCF5 419 aa25.52■■□□□ 1.68
CLN6-221ENST00000637494 UBR3Q6ZT12 1888 aa25.49■■□□□ 1.67
CLN6-221ENST00000637494 GPR162Q16538 588 aa25.49■■□□□ 1.67
CLN6-221ENST00000637494 RTCBQ9Y3I0 505 aaKnown RBP25.48■■□□□ 1.67
CLN6-221ENST00000637494 ZNF831Q5JPB2 1677 aa25.48■■□□□ 1.67
CLN6-221ENST00000637494 PTCD1O75127 700 aaKnown RBP25.46■■□□□ 1.67
CLN6-221ENST00000637494 RC3H1Q5TC82 1133 aaKnown RBP25.46■■□□□ 1.67
CLN6-221ENST00000637494 PELP1Q8IZL8 1130 aaKnown RBP25.46■■□□□ 1.67
CLN6-221ENST00000637494 NUDCQ9Y266 331 aa25.46■■□□□ 1.67
CLN6-221ENST00000637494 SCN11AQ9UI33 1791 aa25.46■■□□□ 1.67
CLN6-221ENST00000637494 MTHFSDQ2M296 383 aaKnown RBP25.45■■□□□ 1.66
CLN6-221ENST00000637494 TRAPPC3LQ5T215 181 aa25.45■■□□□ 1.66
CLN6-221ENST00000637494 SLC52A2Q9HAB3 445 aa25.45■■□□□ 1.66
CLN6-221ENST00000637494 COL3A1P02461 1466 aaPredicted RBP25.45■■□□□ 1.66
CLN6-221ENST00000637494 RNMTO43148 476 aaKnown RBP25.44■■□□□ 1.66
CLN6-221ENST00000637494 AMIGO3Q86WK7 504 aa25.44■■□□□ 1.66
CLN6-221ENST00000637494 CNTNAP4Q9C0A0 1308 aa25.43■■□□□ 1.66
CLN6-221ENST00000637494 SMIM5Q71RC9 77 aa25.43■■□□□ 1.66
CLN6-221ENST00000637494 SLC4A9Q96Q91 983 aa25.43■■□□□ 1.66
CLN6-221ENST00000637494 ADRA2BP18089 450 aa25.42■■□□□ 1.66
CLN6-221ENST00000637494 GAS2L2Q8NHY3 880 aa25.42■■□□□ 1.66
CLN6-221ENST00000637494 LGR6Q9HBX8 967 aa25.42■■□□□ 1.66
CLN6-221ENST00000637494 CD2APQ9Y5K6 639 aa25.42■■□□□ 1.66
CLN6-221ENST00000637494 NLGN2Q8NFZ4 835 aa25.41■■□□□ 1.66
CLN6-221ENST00000637494 RPS6KA4O75676 772 aa25.39■■□□□ 1.66
CLN6-221ENST00000637494 PPP2R1AP30153 589 aa25.39■■□□□ 1.66
CLN6-221ENST00000637494 RFC4P35249 363 aa25.39■■□□□ 1.66
CLN6-221ENST00000637494 COL5A3P25940 1745 aaPredicted RBP25.39■■□□□ 1.65
CLN6-221ENST00000637494 MRC1P22897 1456 aa25.38■■□□□ 1.65
CLN6-221ENST00000637494 GNAT3A8MTJ3 354 aa25.37■■□□□ 1.65
CLN6-221ENST00000637494 NLGN1Q8N2Q7 840 aa25.37■■□□□ 1.65
CLN6-221ENST00000637494 CRKLP46109 303 aaKnown RBP25.36■■□□□ 1.65
CLN6-221ENST00000637494 ARHGEF1Q92888 912 aaKnown RBP25.36■■□□□ 1.65
CLN6-221ENST00000637494 TEFQ10587 303 aa25.35■■□□□ 1.65
CLN6-221ENST00000637494 TTC5Q8N0Z6 440 aa25.35■■□□□ 1.65
CLN6-221ENST00000637494 GRIN3BO60391 1043 aa25.34■■□□□ 1.65
CLN6-221ENST00000637494 U2AF1L5P0DN76 240 aaPredicted RBP25.34■■□□□ 1.65
CLN6-221ENST00000637494 PRKAR2BP31323 418 aa25.34■■□□□ 1.65
CLN6-221ENST00000637494 U2AF1Q01081 240 aaKnown RBP eCLIP25.34■■□□□ 1.65
CLN6-221ENST00000637494 VIRMAQ69YN4 1812 aaKnown RBP25.33■■□□□ 1.65
CLN6-221ENST00000637494 MMP10P09238 476 aa25.33■■□□□ 1.65
CLN6-221ENST00000637494 SLC39A6Q13433 755 aa25.33■■□□□ 1.65
CLN6-221ENST00000637494 ADAMTS7Q9UKP4 1686 aa25.32■■□□□ 1.64
CLN6-221ENST00000637494 CICQ96RK0 1608 aaPredicted RBP25.32■■□□□ 1.64
CLN6-221ENST00000637494 CHD4Q14839 1912 aa25.31■■□□□ 1.64
CLN6-221ENST00000637494 DNAJC10Q8IXB1 793 aa25.31■■□□□ 1.64
CLN6-221ENST00000637494 RSPH6AQ9H0K4 717 aa25.31■■□□□ 1.64
CLN6-221ENST00000637494 TJP1Q07157 1748 aa25.31■■□□□ 1.64
CLN6-221ENST00000637494 CCDC87Q9NVE4 849 aa25.3■■□□□ 1.64
CLN6-221ENST00000637494 FCHSD2O94868 740 aa25.29■■□□□ 1.64
CLN6-221ENST00000637494 NEFMP07197 916 aa25.29■■□□□ 1.64
CLN6-221ENST00000637494 VSIG10Q8N0Z9 540 aa25.29■■□□□ 1.64
CLN6-221ENST00000637494 GYS1P13807 737 aa25.28■■□□□ 1.64
CLN6-221ENST00000637494 PARP3Q9Y6F1 533 aa25.28■■□□□ 1.64
CLN6-221ENST00000637494 RTF1Q92541 710 aaKnown RBP25.27■■□□□ 1.64
CLN6-221ENST00000637494 PHACTR3Q96KR7 559 aa25.27■■□□□ 1.64
CLN6-221ENST00000637494 MYH14Q7Z406 1995 aaKnown RBP25.27■■□□□ 1.64
CLN6-221ENST00000637494 ZPR1O75312 459 aa25.26■■□□□ 1.63
CLN6-221ENST00000637494 YBX3P16989 372 aaKnown RBP eCLIP25.26■■□□□ 1.631e-7■■□□□ 13.8
CLN6-221ENST00000637494 INTS5Q6P9B9 1019 aaKnown RBP25.26■■□□□ 1.63
CLN6-221ENST00000637494 IL17REQ8NFR9 667 aa25.26■■□□□ 1.63
CLN6-221ENST00000637494 KCPQ6ZWJ8 1503 aa25.26■■□□□ 1.63
CLN6-221ENST00000637494 CYP19A1P11511 503 aaPredicted RBP25.25■■□□□ 1.63
CLN6-221ENST00000637494 C4AP0C0L4 1744 aa25.24■■□□□ 1.63
CLN6-221ENST00000637494 USP42Q9H9J4 1324 aaKnown RBP25.24■■□□□ 1.63
CLN6-221ENST00000637494 STARD3NLO95772 234 aa25.24■■□□□ 1.63
CLN6-221ENST00000637494 ZNF790Q6PG37 636 aa25.24■■□□□ 1.63
CLN6-221ENST00000637494 TEX13AQ9BXU3 409 aaPredicted RBP25.24■■□□□ 1.63
CLN6-221ENST00000637494 ZNF784Q8NCA9 323 aaPredicted RBP25.23■■□□□ 1.63
CLN6-221ENST00000637494 SRP68Q9UHB9 627 aaKnown RBP25.22■■□□□ 1.63
CLN6-221ENST00000637494 SOS1Q07889 1333 aaPredicted RBP25.21■■□□□ 1.63
CLN6-221ENST00000637494 TGFB2P61812 414 aa25.21■■□□□ 1.63
CLN6-221ENST00000637494 UBR2Q8IWV8 1755 aa25.21■■□□□ 1.63
CLN6-221ENST00000637494 CEMIPQ8WUJ3 1361 aa25.2■■□□□ 1.63
CLN6-221ENST00000637494 BTBD11A6QL63 1104 aa25.2■■□□□ 1.62
CLN6-221ENST00000637494 FMNL2Q96PY5 1086 aa25.2■■□□□ 1.62
CLN6-221ENST00000637494 PNNQ9H307 717 aaKnown RBP25.2■■□□□ 1.62
CLN6-221ENST00000637494 COL15A1P39059 1388 aa25.19■■□□□ 1.62
CLN6-221ENST00000637494 HEG1Q9ULI3 1381 aa25.19■■□□□ 1.62
CLN6-221ENST00000637494 NPM2Q86SE8 214 aaKnown RBP25.19■■□□□ 1.62
CLN6-221ENST00000637494 ZNF496Q96IT1 587 aaPredicted RBP25.19■■□□□ 1.62
CLN6-221ENST00000637494 ZBTB1Q9Y2K1 713 aa25.19■■□□□ 1.62
CLN6-221ENST00000637494 HTATSF1O43719 755 aaKnown RBP25.18■■□□□ 1.62
CLN6-221ENST00000637494 CANXP27824 592 aaKnown RBP25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms