RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 TNS2Q63HR2 1409 aa24.51■■□□□ 1.51
CLN3-258ENST00000637184 VAMP4O75379 141 aa24.51■■□□□ 1.51
CLN3-258ENST00000637184 FKBP8Q14318 412 aa24.51■■□□□ 1.51
CLN3-258ENST00000637184 KDM3BQ7LBC6 1761 aa24.5■■□□□ 1.51
CLN3-258ENST00000637184 DDB1Q16531 1140 aa24.5■■□□□ 1.51
CLN3-258ENST00000637184 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.5■■□□□ 1.51
CLN3-258ENST00000637184 MRC1P22897 1456 aa24.5■■□□□ 1.51
CLN3-258ENST00000637184 IRX6P78412 446 aaPredicted RBP24.49■■□□□ 1.51
CLN3-258ENST00000637184 NFATC2IPQ8NCF5 419 aa24.49■■□□□ 1.51
CLN3-258ENST00000637184 CABP4P57796 275 aa24.49■■□□□ 1.51
CLN3-258ENST00000637184 KRT24Q2M2I5 525 aa24.49■■□□□ 1.51
CLN3-258ENST00000637184 FAM98CQ17RN3 349 aaKnown RBP24.48■■□□□ 1.51
CLN3-258ENST00000637184 BCL2L13Q9BXK5 485 aa24.48■■□□□ 1.51
CLN3-258ENST00000637184 ERVV-2B6SEH9 535 aa24.47■■□□□ 1.51
CLN3-258ENST00000637184 PLIN1O60240 522 aa24.47■■□□□ 1.51
CLN3-258ENST00000637184 ALDH1L2Q3SY69 923 aa24.47■■□□□ 1.51
CLN3-258ENST00000637184 SMC4Q9NTJ3 1288 aa24.47■■□□□ 1.51
CLN3-258ENST00000637184 SSH1Q8WYL5 1049 aa24.47■■□□□ 1.51
CLN3-258ENST00000637184 TRPC5Q9UL62 973 aaPredicted RBP24.47■■□□□ 1.51
CLN3-258ENST00000637184 GJD4Q96KN9 370 aaPredicted RBP24.45■■□□□ 1.5
CLN3-258ENST00000637184 ATRNO75882 1429 aa24.44■■□□□ 1.5
CLN3-258ENST00000637184 EIF4A1P60842 406 aaKnown RBP24.44■■□□□ 1.5
CLN3-258ENST00000637184 SOS1Q07889 1333 aaPredicted RBP24.43■■□□□ 1.5
CLN3-258ENST00000637184 KCNQ3O43525 872 aa24.43■■□□□ 1.5
CLN3-258ENST00000637184 CANXP27824 592 aaKnown RBP24.43■■□□□ 1.5
CLN3-258ENST00000637184 FRAT1Q92837 279 aaPredicted RBP24.42■■□□□ 1.5
CLN3-258ENST00000637184 TOGARAM1Q9Y4F4 1720 aa24.42■■□□□ 1.5
CLN3-258ENST00000637184 A0A0G2JS52 829 aa24.42■■□□□ 1.5
CLN3-258ENST00000637184 MYT1Q01538 1121 aa24.42■■□□□ 1.5
CLN3-258ENST00000637184 ZNF790Q6PG37 636 aa24.42■■□□□ 1.5
CLN3-258ENST00000637184 GLI3P10071 1580 aa24.41■■□□□ 1.5
CLN3-258ENST00000637184 SLC39A6Q13433 755 aa24.4■■□□□ 1.5
CLN3-258ENST00000637184 TTC5Q8N0Z6 440 aa24.39■■□□□ 1.5
CLN3-258ENST00000637184 QTRT2Q9H974 415 aaKnown RBP24.39■■□□□ 1.5
CLN3-258ENST00000637184 KAT6BQ8WYB5 2073 aa24.39■■□□□ 1.5
CLN3-258ENST00000637184 BRPF1P55201 1214 aaPredicted RBP24.39■■□□□ 1.49
CLN3-258ENST00000637184 TMOD3Q9NYL9 352 aa24.39■■□□□ 1.49
CLN3-258ENST00000637184 KIF16BQ96L93 1317 aa24.39■■□□□ 1.49
CLN3-258ENST00000637184 THSD7AQ9UPZ6 1657 aa24.38■■□□□ 1.49
CLN3-258ENST00000637184 TCERG1O14776 1098 aaKnown RBP24.38■■□□□ 1.49
CLN3-258ENST00000637184 MARCH10Q8NA82 808 aaPredicted RBP24.38■■□□□ 1.49
CLN3-258ENST00000637184 HOXB7P09629 217 aa24.37■■□□□ 1.49
CLN3-258ENST00000637184 ERICH6BQ5W0A0 696 aa24.37■■□□□ 1.49
CLN3-258ENST00000637184 MRPL50Q8N5N7 158 aaKnown RBP24.37■■□□□ 1.49
CLN3-258ENST00000637184 ITGB4P16144 1822 aa24.37■■□□□ 1.49
CLN3-258ENST00000637184 HEG1Q9ULI3 1381 aa24.36■■□□□ 1.49
CLN3-258ENST00000637184 CCDC30Q5VVM6 783 aa24.36■■□□□ 1.49
CLN3-258ENST00000637184 ZKSCAN2Q63HK3 967 aa24.36■■□□□ 1.49
CLN3-258ENST00000637184 CHMP4AQ9BY43 222 aa24.36■■□□□ 1.49
CLN3-258ENST00000637184 NOB1Q9ULX3 412 aaKnown RBP24.36■■□□□ 1.49
CLN3-258ENST00000637184 IPO8O15397 1037 aaKnown RBP24.35■■□□□ 1.49
CLN3-258ENST00000637184 C20orf194Q5TEA3 1177 aa24.35■■□□□ 1.49
CLN3-258ENST00000637184 PDE3AQ14432 1141 aa24.34■■□□□ 1.49
CLN3-258ENST00000637184 ZNF772Q68DY9 489 aaPredicted RBP24.34■■□□□ 1.49
CLN3-258ENST00000637184 DOT1LQ8TEK3 1739 aa24.34■■□□□ 1.49
CLN3-258ENST00000637184 ONECUT3O60422 494 aaPredicted RBP24.34■■□□□ 1.49
CLN3-258ENST00000637184 GIGYF1O75420 1035 aaPredicted RBP24.34■■□□□ 1.49
CLN3-258ENST00000637184 HDGFL1Q5TGJ6 251 aa24.34■■□□□ 1.49
CLN3-258ENST00000637184 STK31Q9BXU1 1019 aa24.34■■□□□ 1.49
CLN3-258ENST00000637184 FMNL2Q96PY5 1086 aa24.33■■□□□ 1.49
CLN3-258ENST00000637184 PAPPAQ13219 1627 aa24.32■■□□□ 1.48
CLN3-258ENST00000637184 PIGBQ92521 554 aa24.32■■□□□ 1.48
CLN3-258ENST00000637184 SYTL4Q96C24 671 aaPredicted RBP24.32■■□□□ 1.48
CLN3-258ENST00000637184 ZNF496Q96IT1 587 aaPredicted RBP24.32■■□□□ 1.48
CLN3-258ENST00000637184 CACNA1FO60840 1977 aa24.32■■□□□ 1.48
CLN3-258ENST00000637184 EIF2S2P20042 333 aaKnown RBP24.31■■□□□ 1.48
CLN3-258ENST00000637184 ATF7IPQ6VMQ6 1270 aa24.31■■□□□ 1.48
CLN3-258ENST00000637184 NECTIN2Q92692 538 aa24.31■■□□□ 1.48
CLN3-258ENST00000637184 SLC4A2P04920 1241 aa24.31■■□□□ 1.48
CLN3-258ENST00000637184 MS4A1P11836 297 aa24.31■■□□□ 1.48
CLN3-258ENST00000637184 BCL9O00512 1426 aa24.3■■□□□ 1.48
CLN3-258ENST00000637184 PRIM1P49642 420 aaKnown RBP24.3■■□□□ 1.48
CLN3-258ENST00000637184 UBR2Q8IWV8 1755 aa24.3■■□□□ 1.48
CLN3-258ENST00000637184 ARHGAP45Q92619 1136 aa24.29■■□□□ 1.48
CLN3-258ENST00000637184 CRBNQ96SW2 442 aa24.29■■□□□ 1.48
CLN3-258ENST00000637184 SNRPA1P09661 255 aaKnown RBP24.29■■□□□ 1.48
CLN3-258ENST00000637184 TRIM27P14373 513 aa24.29■■□□□ 1.48
CLN3-258ENST00000637184 FTSJ3Q8IY81 847 aaKnown RBP24.29■■□□□ 1.48
CLN3-258ENST00000637184 SEPT12Q8IYM1 358 aa24.29■■□□□ 1.48
CLN3-258ENST00000637184 DZIP1LQ8IYY4 767 aaKnown RBP24.28■■□□□ 1.48
CLN3-258ENST00000637184 EXOC6Q8TAG9 804 aa24.28■■□□□ 1.48
CLN3-258ENST00000637184 PANK1Q8TE04 598 aa24.28■■□□□ 1.48
CLN3-258ENST00000637184 CLUAP1Q96AJ1 413 aa24.28■■□□□ 1.48
CLN3-258ENST00000637184 PRAMEF22A3QJZ6 481 aa24.27■■□□□ 1.48
CLN3-258ENST00000637184 ACSBG1Q96GR2 724 aa24.27■■□□□ 1.48
CLN3-258ENST00000637184 TNNQ9UQP3 1299 aa24.27■■□□□ 1.48
CLN3-258ENST00000637184 C5P01031 1676 aa24.27■■□□□ 1.48
CLN3-258ENST00000637184 ASAP1Q9ULH1 1129 aa24.26■■□□□ 1.47
CLN3-258ENST00000637184 KCPQ6ZWJ8 1503 aa24.26■■□□□ 1.47
CLN3-258ENST00000637184 ATG3Q9NT62 314 aa24.26■■□□□ 1.47
CLN3-258ENST00000637184 PTCD1O75127 700 aaKnown RBP24.25■■□□□ 1.47
CLN3-258ENST00000637184 RBM6P78332 1123 aaKnown RBP24.25■■□□□ 1.47
CLN3-258ENST00000637184 API5Q9BZZ5 524 aaKnown RBP24.25■■□□□ 1.47
CLN3-258ENST00000637184 PTPRCP08575 1304 aa24.25■■□□□ 1.47
CLN3-258ENST00000637184 RLBP1P12271 317 aa24.24■■□□□ 1.47
CLN3-258ENST00000637184 CHPF2Q9P2E5 772 aa24.24■■□□□ 1.47
CLN3-258ENST00000637184 DBF4Q9UBU7 674 aaPredicted RBP24.24■■□□□ 1.47
CLN3-258ENST00000637184 COG6Q9Y2V7 657 aa24.23■■□□□ 1.47
CLN3-258ENST00000637184 G2E3Q7L622 706 aa24.22■■□□□ 1.47
CLN3-258ENST00000637184 PPP4R2Q9NY27 417 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms