RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PLEKHG2Q9H7P9 1386 aa20.67■□□□□ 0.9
CLN3-249ENST00000636685 C10orf71Q711Q0 1435 aa20.67■□□□□ 0.9
CLN3-249ENST00000636685 ITPK1Q13572 414 aa20.65■□□□□ 0.9
CLN3-249ENST00000636685 TNRC6CQ9HCJ0 1690 aaKnown RBP20.64■□□□□ 0.9
CLN3-249ENST00000636685 SMG6Q86US8 1419 aaKnown RBP20.64■□□□□ 0.89
CLN3-249ENST00000636685 KDM2BQ8NHM5 1336 aa20.64■□□□□ 0.89
CLN3-249ENST00000636685 SBF1O95248 1867 aa20.63■□□□□ 0.89
CLN3-249ENST00000636685 C4AP0C0L4 1744 aa20.62■□□□□ 0.89
CLN3-249ENST00000636685 SIN3AQ96ST3 1273 aa20.62■□□□□ 0.89
CLN3-249ENST00000636685 KCNA3P22001 575 aa20.61■□□□□ 0.89
CLN3-249ENST00000636685 ATP6V1AP38606 617 aa20.61■□□□□ 0.89
CLN3-249ENST00000636685 SMC1BQ8NDV3 1235 aa20.61■□□□□ 0.89
CLN3-249ENST00000636685 CCDC87Q9NVE4 849 aa20.61■□□□□ 0.89
CLN3-249ENST00000636685 RNF181Q9P0P0 153 aa20.61■□□□□ 0.89
CLN3-249ENST00000636685 TMF1P82094 1093 aa20.6■□□□□ 0.89
CLN3-249ENST00000636685 HSP90AB2PQ58FF8 381 aa20.6■□□□□ 0.89
CLN3-249ENST00000636685 ASAP1Q9ULH1 1129 aa20.6■□□□□ 0.89
CLN3-249ENST00000636685 NLGN1Q8N2Q7 840 aa20.59■□□□□ 0.89
CLN3-249ENST00000636685 TRAPPC3LQ5T215 181 aa20.58■□□□□ 0.89
CLN3-249ENST00000636685 CARD11Q9BXL7 1154 aa20.58■□□□□ 0.89
CLN3-249ENST00000636685 SLC34A2O95436 690 aa20.57■□□□□ 0.88
CLN3-249ENST00000636685 NKX1-1Q15270 411 aaPredicted RBP20.57■□□□□ 0.88
CLN3-249ENST00000636685 DCAF5Q96JK2 942 aa20.57■□□□□ 0.88
CLN3-249ENST00000636685 INSRP06213 1382 aa20.57■□□□□ 0.88
CLN3-249ENST00000636685 NEUROD1Q13562 356 aa20.56■□□□□ 0.88
CLN3-249ENST00000636685 PUS7Q96PZ0 661 aaKnown RBP20.56■□□□□ 0.88
CLN3-249ENST00000636685 TMOD3Q9NYL9 352 aa20.56■□□□□ 0.88
CLN3-249ENST00000636685 PIM2Q9P1W9 311 aa20.56■□□□□ 0.88
CLN3-249ENST00000636685 RTCBQ9Y3I0 505 aaKnown RBP20.56■□□□□ 0.88
CLN3-249ENST00000636685 GYS1P13807 737 aa20.55■□□□□ 0.88
CLN3-249ENST00000636685 DALRD3Q5D0E6 543 aaKnown RBP20.55■□□□□ 0.88
CLN3-249ENST00000636685 ARHGEF1Q92888 912 aaKnown RBP20.55■□□□□ 0.88
CLN3-249ENST00000636685 GGNBP2Q9H3C7 697 aa20.55■□□□□ 0.88
CLN3-249ENST00000636685 PARP3Q9Y6F1 533 aa20.55■□□□□ 0.88
CLN3-249ENST00000636685 ATG3Q9NT62 314 aa20.54■□□□□ 0.88
CLN3-249ENST00000636685 FYB1O15117 783 aa20.52■□□□□ 0.88
CLN3-249ENST00000636685 FLT4P35916 1363 aa20.51■□□□□ 0.87
CLN3-249ENST00000636685 SPG7Q9UQ90 795 aa20.51■□□□□ 0.87
CLN3-249ENST00000636685 COL5A3P25940 1745 aaPredicted RBP20.5■□□□□ 0.87
CLN3-249ENST00000636685 MYH14Q7Z406 1995 aaKnown RBP20.5■□□□□ 0.87
CLN3-249ENST00000636685 KDRP35968 1356 aa20.5■□□□□ 0.87
CLN3-249ENST00000636685 RFC4P35249 363 aa20.5■□□□□ 0.87
CLN3-249ENST00000636685 SLC4A9Q96Q91 983 aa20.5■□□□□ 0.87
CLN3-249ENST00000636685 ADRA2BP18089 450 aa20.49■□□□□ 0.87
CLN3-249ENST00000636685 CHRNA5P30532 468 aa20.49■□□□□ 0.87
CLN3-249ENST00000636685 CCDC88AQ3V6T2 1871 aa20.48■□□□□ 0.87
CLN3-249ENST00000636685 RASSF7Q02833 373 aa20.48■□□□□ 0.87
CLN3-249ENST00000636685 NCAPD2Q15021 1401 aa20.47■□□□□ 0.87
CLN3-249ENST00000636685 VEGFAP15692 232 aaPredicted RBP20.47■□□□□ 0.87
CLN3-249ENST00000636685 RC3H1Q5TC82 1133 aaKnown RBP20.47■□□□□ 0.87
CLN3-249ENST00000636685 RBM42Q9BTD8 480 aaKnown RBP20.47■□□□□ 0.87
CLN3-249ENST00000636685 KIF20BQ96Q89 1820 aa20.47■□□□□ 0.87
CLN3-249ENST00000636685 ZNF831Q5JPB2 1677 aa20.46■□□□□ 0.87
CLN3-249ENST00000636685 RPS6KA4O75676 772 aa20.46■□□□□ 0.87
CLN3-249ENST00000636685 PHKG2P15735 406 aa20.45■□□□□ 0.86
CLN3-249ENST00000636685 DDR1Q08345 913 aa20.45■□□□□ 0.86
CLN3-249ENST00000636685 EMILIN1Q9Y6C2 1016 aa20.45■□□□□ 0.86
CLN3-249ENST00000636685 CNTNAP4Q9C0A0 1308 aa20.45■□□□□ 0.86
CLN3-249ENST00000636685 KIF24Q5T7B8 1368 aa20.45■□□□□ 0.86
CLN3-249ENST00000636685 GLTPD2A6NH11 291 aa20.44■□□□□ 0.86
CLN3-249ENST00000636685 IFNL2Q8IZJ0 200 aa20.44■□□□□ 0.86
CLN3-249ENST00000636685 TESK2Q96S53 571 aa20.44■□□□□ 0.86
CLN3-249ENST00000636685 SRP68Q9UHB9 627 aaKnown RBP20.44■□□□□ 0.86
CLN3-249ENST00000636685 ZC3H4Q9UPT8 1303 aaKnown RBP20.44■□□□□ 0.86
CLN3-249ENST00000636685 KDM6AO15550 1401 aaPredicted RBP20.44■□□□□ 0.86
CLN3-249ENST00000636685 FKBP8Q14318 412 aa20.43■□□□□ 0.86
CLN3-249ENST00000636685 TIAM2Q8IVF5 1701 aa20.43■□□□□ 0.86
CLN3-249ENST00000636685 FOXN1O15353 648 aa20.42■□□□□ 0.86
CLN3-249ENST00000636685 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLN3-249ENST00000636685 MKRN1Q9UHC7 482 aaKnown RBP20.42■□□□□ 0.86
CLN3-249ENST00000636685 LMNB1P20700 586 aa20.41■□□□□ 0.86
CLN3-249ENST00000636685 TONSLQ96HA7 1378 aa20.4■□□□□ 0.86
CLN3-249ENST00000636685 EYA1Q99502 592 aa20.4■□□□□ 0.86
CLN3-249ENST00000636685 ST20-MTHFSA0A0A6YYL1 179 aa20.39■□□□□ 0.85
CLN3-249ENST00000636685 POTECB2RU33 542 aa20.39■□□□□ 0.85
CLN3-249ENST00000636685 PPM1GO15355 546 aaPredicted RBP20.39■□□□□ 0.85
CLN3-249ENST00000636685 USP42Q9H9J4 1324 aaKnown RBP20.38■□□□□ 0.85
CLN3-249ENST00000636685 POLRMTO00411 1230 aaKnown RBP20.37■□□□□ 0.85
CLN3-249ENST00000636685 PRDM10Q9NQV6 1147 aa20.37■□□□□ 0.85
CLN3-249ENST00000636685 AFDNP55196 1824 aaKnown RBP20.37■□□□□ 0.85
CLN3-249ENST00000636685 CREBZFQ9NS37 354 aa20.36■□□□□ 0.85
CLN3-249ENST00000636685 ANKRD26Q9UPS8 1709 aa20.36■□□□□ 0.85
CLN3-249ENST00000636685 ERVV-2B6SEH9 535 aa20.35■□□□□ 0.85
CLN3-249ENST00000636685 CRKLP46109 303 aaKnown RBP20.35■□□□□ 0.85
CLN3-249ENST00000636685 DLEC1Q9Y238 1755 aa20.35■□□□□ 0.85
CLN3-249ENST00000636685 TM4SF1P30408 202 aa20.34■□□□□ 0.85
CLN3-249ENST00000636685 FAM161AQ3B820 660 aa20.34■□□□□ 0.85
CLN3-249ENST00000636685 ADAMTS7Q9UKP4 1686 aa20.33■□□□□ 0.85
CLN3-249ENST00000636685 WASHC2AQ641Q2 1341 aa20.32■□□□□ 0.84
CLN3-249ENST00000636685 NFKBIEO00221 500 aa20.32■□□□□ 0.84
CLN3-249ENST00000636685 PTCD1O75127 700 aaKnown RBP20.32■□□□□ 0.84
CLN3-249ENST00000636685 CTCFP49711 727 aaPredicted RBP20.32■□□□□ 0.84
CLN3-249ENST00000636685 TJP1Q07157 1748 aa20.32■□□□□ 0.84
CLN3-249ENST00000636685 DICER1Q9UPY3 1922 aaKnown RBP20.31■□□□□ 0.84
CLN3-249ENST00000636685 CHADLQ6NUI6 762 aa20.31■□□□□ 0.84
CLN3-249ENST00000636685 CNTNAP1P78357 1384 aa20.31■□□□□ 0.84
CLN3-249ENST00000636685 POTEIP0CG38 1075 aa20.3■□□□□ 0.84
CLN3-249ENST00000636685 POTEJP0CG39 1038 aa20.3■□□□□ 0.84
CLN3-249ENST00000636685 AIDAQ96BJ3 306 aa20.3■□□□□ 0.84
CLN3-249ENST00000636685 CABP4P57796 275 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms