RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 CHD4Q14839 1912 aa24.25■■□□□ 1.47
CLN3-243ENST00000635973 LOC102724428A0A0B4J2F2 783 aa24.25■■□□□ 1.47
CLN3-243ENST00000635973 U2SURPO15042 1029 aaKnown RBP24.25■■□□□ 1.47
CLN3-243ENST00000635973 SIK1P57059 783 aa24.25■■□□□ 1.47
CLN3-243ENST00000635973 MSL1Q68DK7 614 aa24.24■■□□□ 1.47
CLN3-243ENST00000635973 SULT6B1Q6IMI4 303 aa24.24■■□□□ 1.47
CLN3-243ENST00000635973 PELP1Q8IZL8 1130 aaKnown RBP24.24■■□□□ 1.47
CLN3-243ENST00000635973 ZNF784Q8NCA9 323 aaPredicted RBP24.24■■□□□ 1.47
CLN3-243ENST00000635973 PRKRIP1Q9H875 184 aaPredicted RBP24.24■■□□□ 1.47
CLN3-243ENST00000635973 ASAP1Q9ULH1 1129 aa24.24■■□□□ 1.47
CLN3-243ENST00000635973 ATP6V1AP38606 617 aa24.23■■□□□ 1.47
CLN3-243ENST00000635973 C1orf141Q5JVX7 400 aa24.23■■□□□ 1.47
CLN3-243ENST00000635973 ZNF530Q6P9A1 599 aaPredicted RBP24.23■■□□□ 1.47
CLN3-243ENST00000635973 NUDCQ9Y266 331 aa24.23■■□□□ 1.47
CLN3-243ENST00000635973 ERVV-2B6SEH9 535 aa24.22■■□□□ 1.47
CLN3-243ENST00000635973 PHF14O94880 888 aa24.22■■□□□ 1.47
CLN3-243ENST00000635973 AEBP1Q8IUX7 1158 aa24.22■■□□□ 1.47
CLN3-243ENST00000635973 DCAF5Q96JK2 942 aa24.22■■□□□ 1.47
CLN3-243ENST00000635973 HMOX1P09601 288 aa24.21■■□□□ 1.47
CLN3-243ENST00000635973 UBR3Q6ZT12 1888 aa24.21■■□□□ 1.47
CLN3-243ENST00000635973 ANP32CO43423 234 aa24.2■■□□□ 1.46
CLN3-243ENST00000635973 ATG3Q9NT62 314 aa24.2■■□□□ 1.46
CLN3-243ENST00000635973 CABP4P57796 275 aa24.19■■□□□ 1.46
CLN3-243ENST00000635973 KDRP35968 1356 aa24.18■■□□□ 1.46
CLN3-243ENST00000635973 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.18■■□□□ 1.46
CLN3-243ENST00000635973 LINC00116Q8NCU8 138 aa24.18■■□□□ 1.46
CLN3-243ENST00000635973 RBM42Q9BTD8 480 aaKnown RBP24.18■■□□□ 1.46
CLN3-243ENST00000635973 SSFA2P28290 1259 aa24.17■■□□□ 1.46
CLN3-243ENST00000635973 GNPATO15228 680 aa24.16■■□□□ 1.46
CLN3-243ENST00000635973 NLGN2Q8NFZ4 835 aa24.16■■□□□ 1.46
CLN3-243ENST00000635973 U2AF1L5P0DN76 240 aaPredicted RBP24.15■■□□□ 1.46
CLN3-243ENST00000635973 U2AF1Q01081 240 aaKnown RBP eCLIP24.15■■□□□ 1.46
CLN3-243ENST00000635973 ITPK1Q13572 414 aa24.15■■□□□ 1.46
CLN3-243ENST00000635973 KDM6AO15550 1401 aaPredicted RBP24.12■■□□□ 1.45
CLN3-243ENST00000635973 SMIM5Q71RC9 77 aa24.12■■□□□ 1.45
CLN3-243ENST00000635973 AMIGO3Q86WK7 504 aa24.11■■□□□ 1.45
CLN3-243ENST00000635973 RTCBQ9Y3I0 505 aaKnown RBP24.11■■□□□ 1.45
CLN3-243ENST00000635973 CD2APQ9Y5K6 639 aa24.11■■□□□ 1.45
CLN3-243ENST00000635973 ZNF831Q5JPB2 1677 aa24.1■■□□□ 1.45
CLN3-243ENST00000635973 SCN11AQ9UI33 1791 aa24.09■■□□□ 1.45
CLN3-243ENST00000635973 GRIN3BO60391 1043 aa24.09■■□□□ 1.45
CLN3-243ENST00000635973 TRAPPC3LQ5T215 181 aa24.09■■□□□ 1.45
CLN3-243ENST00000635973 NFATC2IPQ8NCF5 419 aa24.09■■□□□ 1.45
CLN3-243ENST00000635973 PRKAR2BP31323 418 aa24.08■■□□□ 1.45
CLN3-243ENST00000635973 AKAP4Q5JQC9 854 aa24.08■■□□□ 1.45
CLN3-243ENST00000635973 PTCD1O75127 700 aaKnown RBP24.07■■□□□ 1.44
CLN3-243ENST00000635973 RSPH6AQ9H0K4 717 aa24.07■■□□□ 1.44
CLN3-243ENST00000635973 COL5A3P25940 1745 aaPredicted RBP24.07■■□□□ 1.44
CLN3-243ENST00000635973 VIRMAQ69YN4 1812 aaKnown RBP24.06■■□□□ 1.44
CLN3-243ENST00000635973 WDR43Q15061 677 aaKnown RBP eCLIP24.06■■□□□ 1.44
CLN3-243ENST00000635973 FCHSD2O94868 740 aa24.05■■□□□ 1.44
CLN3-243ENST00000635973 NEFMP07197 916 aa24.05■■□□□ 1.44
CLN3-243ENST00000635973 RC3H1Q5TC82 1133 aaKnown RBP24.05■■□□□ 1.44
CLN3-243ENST00000635973 GOLGB1Q14789 3259 aaKnown RBP24.04■■□□□ 1.44
CLN3-243ENST00000635973 SLC4A9Q96Q91 983 aa24.04■■□□□ 1.44
CLN3-243ENST00000635973 CNTNAP4Q9C0A0 1308 aa24.04■■□□□ 1.44
CLN3-243ENST00000635973 YBX3P16989 372 aaKnown RBP eCLIP24.03■■□□□ 1.44
CLN3-243ENST00000635973 ADRA2BP18089 450 aa24.03■■□□□ 1.44
CLN3-243ENST00000635973 RFC4P35249 363 aa24.03■■□□□ 1.44
CLN3-243ENST00000635973 GAS2L2Q8NHY3 880 aa24.02■■□□□ 1.44
CLN3-243ENST00000635973 RPS6KA4O75676 772 aa24.01■■□□□ 1.43
CLN3-243ENST00000635973 C1QTNF8P60827 252 aa24.01■■□□□ 1.43
CLN3-243ENST00000635973 MTHFSDQ2M296 383 aaKnown RBP24.01■■□□□ 1.43
CLN3-243ENST00000635973 NLGN1Q8N2Q7 840 aa24.01■■□□□ 1.43
CLN3-243ENST00000635973 PNNQ9H307 717 aaKnown RBP24.01■■□□□ 1.43
CLN3-243ENST00000635973 MMP10P09238 476 aa24■■□□□ 1.43
CLN3-243ENST00000635973 ARHGEF1Q92888 912 aaKnown RBP24■■□□□ 1.43
CLN3-243ENST00000635973 SLC52A2Q9HAB3 445 aa24■■□□□ 1.43
CLN3-243ENST00000635973 LGR6Q9HBX8 967 aa23.99■■□□□ 1.43
CLN3-243ENST00000635973 MRS2Q9HD23 443 aa23.99■■□□□ 1.43
CLN3-243ENST00000635973 MYH14Q7Z406 1995 aaKnown RBP23.99■■□□□ 1.43
CLN3-243ENST00000635973 MAPK8IP3Q9UPT6 1336 aa23.99■■□□□ 1.43
CLN3-243ENST00000635973 RNMTO43148 476 aaKnown RBP23.98■■□□□ 1.43
CLN3-243ENST00000635973 PHACTR3Q96KR7 559 aa23.98■■□□□ 1.43
CLN3-243ENST00000635973 SENP3-EIF4A1A0A087X0R7 540 aa23.97■■□□□ 1.43
CLN3-243ENST00000635973 CRKLP46109 303 aaKnown RBP23.97■■□□□ 1.43
CLN3-243ENST00000635973 TJP1Q07157 1748 aa23.96■■□□□ 1.43
CLN3-243ENST00000635973 GIGYF1O75420 1035 aaPredicted RBP23.95■■□□□ 1.42
CLN3-243ENST00000635973 CCDC184Q52MB2 194 aa23.95■■□□□ 1.42
CLN3-243ENST00000635973 WWC3Q9ULE0 1092 aa23.95■■□□□ 1.42
CLN3-243ENST00000635973 C4AP0C0L4 1744 aa23.95■■□□□ 1.42
CLN3-243ENST00000635973 DIEXFQ68CQ4 756 aaKnown RBP23.94■■□□□ 1.42
CLN3-243ENST00000635973 PARP3Q9Y6F1 533 aa23.94■■□□□ 1.42
CLN3-243ENST00000635973 CICQ96RK0 1608 aaPredicted RBP23.93■■□□□ 1.42
CLN3-243ENST00000635973 GNAT3A8MTJ3 354 aa23.93■■□□□ 1.42
CLN3-243ENST00000635973 GYS1P13807 737 aa23.93■■□□□ 1.42
CLN3-243ENST00000635973 CCDC87Q9NVE4 849 aa23.93■■□□□ 1.42
CLN3-243ENST00000635973 SLC39A6Q13433 755 aa23.92■■□□□ 1.42
CLN3-243ENST00000635973 CCDC146Q8IYE0 955 aa23.92■■□□□ 1.42
CLN3-243ENST00000635973 PLEKHF1Q96S99 279 aa23.92■■□□□ 1.42
CLN3-243ENST00000635973 ADAMTS8Q9UP79 889 aa23.92■■□□□ 1.42
CLN3-243ENST00000635973 MRC1P22897 1456 aa23.92■■□□□ 1.42
CLN3-243ENST00000635973 DNAJC10Q8IXB1 793 aa23.91■■□□□ 1.42
CLN3-243ENST00000635973 KIF13BQ9NQT8 1826 aa23.91■■□□□ 1.42
CLN3-243ENST00000635973 TTC5Q8N0Z6 440 aa23.9■■□□□ 1.42
CLN3-243ENST00000635973 RTF1Q92541 710 aaKnown RBP23.9■■□□□ 1.42
CLN3-243ENST00000635973 N4BP2Q86UW6 1770 aaPredicted RBP23.89■■□□□ 1.42
CLN3-243ENST00000635973 TGFB2P61812 414 aa23.89■■□□□ 1.41
CLN3-243ENST00000635973 TEFQ10587 303 aa23.89■■□□□ 1.41
CLN3-243ENST00000635973 ADAMTS7Q9UKP4 1686 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms