RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 WWC3Q9ULE0 1092 aa21.67■■□□□ 1.06
PNKP-222ENST00000629088 SSFA2P28290 1259 aa21.66■■□□□ 1.06
PNKP-222ENST00000629088 ITPK1Q13572 414 aa21.66■■□□□ 1.06
PNKP-222ENST00000629088 HSP90AB1P08238 724 aaKnown RBP21.65■■□□□ 1.06
PNKP-222ENST00000629088 MORC1Q86VD1 984 aa21.65■■□□□ 1.06
PNKP-222ENST00000629088 KNSTRNQ9Y448 316 aa21.65■■□□□ 1.06
PNKP-222ENST00000629088 GPBP1L1Q9HC44 474 aaPredicted RBP21.64■■□□□ 1.05
PNKP-222ENST00000629088 UBR3Q6ZT12 1888 aa21.63■■□□□ 1.05
PNKP-222ENST00000629088 ERVV-2B6SEH9 535 aa21.63■■□□□ 1.05
PNKP-222ENST00000629088 GNPATO15228 680 aa21.63■■□□□ 1.05
PNKP-222ENST00000629088 ATP6V1AP38606 617 aa21.63■■□□□ 1.05
PNKP-222ENST00000629088 AMOTQ4VCS5 1084 aa21.63■■□□□ 1.05
PNKP-222ENST00000629088 PLEKHO1Q53GL0 409 aaPredicted RBP21.63■■□□□ 1.05
PNKP-222ENST00000629088 ZNF526Q8TF50 670 aaPredicted RBP21.63■■□□□ 1.05
PNKP-222ENST00000629088 ATG3Q9NT62 314 aa21.63■■□□□ 1.05
PNKP-222ENST00000629088 ADCY9O60503 1353 aa21.62■■□□□ 1.05
PNKP-222ENST00000629088 DCAF5Q96JK2 942 aa21.62■■□□□ 1.05
PNKP-222ENST00000629088 ZNF831Q5JPB2 1677 aa21.6■■□□□ 1.05
PNKP-222ENST00000629088 KDRP35968 1356 aa21.6■■□□□ 1.05
PNKP-222ENST00000629088 MMP10P09238 476 aa21.58■■□□□ 1.05
PNKP-222ENST00000629088 AMER1Q5JTC6 1135 aaPredicted RBP21.58■■□□□ 1.05
PNKP-222ENST00000629088 KIF7Q2M1P5 1343 aa21.57■■□□□ 1.04
PNKP-222ENST00000629088 SLC4A9Q96Q91 983 aa21.57■■□□□ 1.04
PNKP-222ENST00000629088 KDM6AO15550 1401 aaPredicted RBP21.56■■□□□ 1.04
PNKP-222ENST00000629088 ZNF530Q6P9A1 599 aaPredicted RBP21.56■■□□□ 1.04
PNKP-222ENST00000629088 TRAPPC3LQ5T215 181 aa21.55■■□□□ 1.04
PNKP-222ENST00000629088 IL13P35225 146 aa21.54■■□□□ 1.04
PNKP-222ENST00000629088 C1orf141Q5JVX7 400 aa21.54■■□□□ 1.04
PNKP-222ENST00000629088 AEBP1Q8IUX7 1158 aa21.54■■□□□ 1.04
PNKP-222ENST00000629088 RBM42Q9BTD8 480 aaKnown RBP21.54■■□□□ 1.04
PNKP-222ENST00000629088 RTCBQ9Y3I0 505 aaKnown RBP21.54■■□□□ 1.04
PNKP-222ENST00000629088 HSPA6P17066 643 aa21.53■■□□□ 1.04
PNKP-222ENST00000629088 CABP4P57796 275 aa21.53■■□□□ 1.04
PNKP-222ENST00000629088 SULT6B1Q6IMI4 303 aa21.53■■□□□ 1.04
PNKP-222ENST00000629088 MTHFSP49914 203 aa21.52■■□□□ 1.04
PNKP-222ENST00000629088 RC3H1Q5TC82 1133 aaKnown RBP21.52■■□□□ 1.04
PNKP-222ENST00000629088 ARHGEF1Q92888 912 aaKnown RBP21.52■■□□□ 1.04
PNKP-222ENST00000629088 A0A0G2JLW4 131 aa21.51■■□□□ 1.03
PNKP-222ENST00000629088 PER1O15534 1290 aaPredicted RBP21.51■■□□□ 1.03
PNKP-222ENST00000629088 ADRA2BP18089 450 aa21.51■■□□□ 1.03
PNKP-222ENST00000629088 IFFO2Q5TF58 517 aa21.51■■□□□ 1.03
PNKP-222ENST00000629088 NLGN1Q8N2Q7 840 aa21.51■■□□□ 1.03
PNKP-222ENST00000629088 CNTNAP4Q9C0A0 1308 aa21.51■■□□□ 1.03
PNKP-222ENST00000629088 PXDNLA1KZ92 1463 aa21.51■■□□□ 1.03
PNKP-222ENST00000629088 COL5A3P25940 1745 aaPredicted RBP21.5■■□□□ 1.03
PNKP-222ENST00000629088 KIF3CO14782 793 aa21.5■■□□□ 1.03
PNKP-222ENST00000629088 TGFB2P61812 414 aa21.5■■□□□ 1.03
PNKP-222ENST00000629088 GYS1P13807 737 aa21.49■■□□□ 1.03
PNKP-222ENST00000629088 NPC1L1Q9UHC9 1359 aa21.48■■□□□ 1.03
PNKP-222ENST00000629088 CICQ96RK0 1608 aaPredicted RBP21.48■■□□□ 1.03
PNKP-222ENST00000629088 BCS1LQ9Y276 419 aa21.48■■□□□ 1.03
PNKP-222ENST00000629088 RPS6KA4O75676 772 aa21.47■■□□□ 1.03
PNKP-222ENST00000629088 RFC4P35249 363 aa21.47■■□□□ 1.03
PNKP-222ENST00000629088 AKAP4Q5JQC9 854 aa21.47■■□□□ 1.03
PNKP-222ENST00000629088 DPEP1P16444 411 aa21.46■■□□□ 1.03
PNKP-222ENST00000629088 SCN11AQ9UI33 1791 aa21.46■■□□□ 1.03
PNKP-222ENST00000629088 C10orf71Q711Q0 1435 aa21.46■■□□□ 1.03
PNKP-222ENST00000629088 ARHGAP27Q6ZUM4 889 aa21.45■■□□□ 1.02
PNKP-222ENST00000629088 NFATC2IPQ8NCF5 419 aa21.45■■□□□ 1.02
PNKP-222ENST00000629088 CCDC87Q9NVE4 849 aa21.45■■□□□ 1.02
PNKP-222ENST00000629088 PTCD1O75127 700 aaKnown RBP21.44■■□□□ 1.02
PNKP-222ENST00000629088 PARP3Q9Y6F1 533 aa21.44■■□□□ 1.02
PNKP-222ENST00000629088 MRC1P22897 1456 aa21.44■■□□□ 1.02
PNKP-222ENST00000629088 FCHSD2O94868 740 aa21.42■■□□□ 1.02
PNKP-222ENST00000629088 KIF13BQ9NQT8 1826 aa21.41■■□□□ 1.02
PNKP-222ENST00000629088 KIAA1551Q9HCM1 1747 aa21.41■■□□□ 1.02
PNKP-222ENST00000629088 DIAPH1O60610 1272 aaKnown RBP21.41■■□□□ 1.02
PNKP-222ENST00000629088 KCNA3P22001 575 aa21.41■■□□□ 1.02
PNKP-222ENST00000629088 CRKLP46109 303 aaKnown RBP21.41■■□□□ 1.02
PNKP-222ENST00000629088 SLC52A2Q9HAB3 445 aa21.41■■□□□ 1.02
PNKP-222ENST00000629088 SRP68Q9UHB9 627 aaKnown RBP21.41■■□□□ 1.02
PNKP-222ENST00000629088 CC2D1BQ5T0F9 858 aaKnown RBP21.4■■□□□ 1.02
PNKP-222ENST00000629088 ADAMTS7Q9UKP4 1686 aa21.4■■□□□ 1.02
PNKP-222ENST00000629088 MYH14Q7Z406 1995 aaKnown RBP21.39■■□□□ 1.02
PNKP-222ENST00000629088 N4BP2Q86UW6 1770 aaPredicted RBP21.39■■□□□ 1.01
PNKP-222ENST00000629088 TJP1Q07157 1748 aa21.39■■□□□ 1.01
PNKP-222ENST00000629088 FKBP8Q14318 412 aa21.39■■□□□ 1.01
PNKP-222ENST00000629088 C4AP0C0L4 1744 aa21.38■■□□□ 1.01
PNKP-222ENST00000629088 HMOX1P09601 288 aa21.38■■□□□ 1.01
PNKP-222ENST00000629088 NMRK2Q9NPI5 230 aa21.38■■□□□ 1.01
PNKP-222ENST00000629088 RNMTO43148 476 aaKnown RBP21.37■■□□□ 1.01
PNKP-222ENST00000629088 DDR1Q08345 913 aa21.37■■□□□ 1.01
PNKP-222ENST00000629088 COL3A1P02461 1466 aaPredicted RBP21.37■■□□□ 1.01
PNKP-222ENST00000629088 USP42Q9H9J4 1324 aaKnown RBP21.36■■□□□ 1.01
PNKP-222ENST00000629088 TOMM70O94826 608 aa21.36■■□□□ 1.01
PNKP-222ENST00000629088 C9orf131Q5VYM1 1079 aa21.36■■□□□ 1.01
PNKP-222ENST00000629088 INTS5Q6P9B9 1019 aaKnown RBP21.36■■□□□ 1.01
PNKP-222ENST00000629088 PIM2Q9P1W9 311 aa21.36■■□□□ 1.01
PNKP-222ENST00000629088 APLP1P51693 650 aa21.35■■□□□ 1.01
PNKP-222ENST00000629088 MTHFSDQ2M296 383 aaKnown RBP21.35■■□□□ 1.01
PNKP-222ENST00000629088 LGR6Q9HBX8 967 aa21.35■■□□□ 1.01
PNKP-222ENST00000629088 DALRD3Q5D0E6 543 aaKnown RBP21.33■■□□□ 1.01
PNKP-222ENST00000629088 TM4SF1P30408 202 aa21.32■■□□□ 1
PNKP-222ENST00000629088 CHRNA5P30532 468 aa21.32■■□□□ 1
PNKP-222ENST00000629088 DNAJC10Q8IXB1 793 aa21.32■■□□□ 1
PNKP-222ENST00000629088 VSIG10Q8N0Z9 540 aa21.32■■□□□ 1
PNKP-222ENST00000629088 KCPQ6ZWJ8 1503 aa21.32■■□□□ 1
PNKP-222ENST00000629088 VIRMAQ69YN4 1812 aaKnown RBP21.32■■□□□ 1
PNKP-222ENST00000629088 POLRMTO00411 1230 aaKnown RBP21.31■■□□□ 1
PNKP-222ENST00000629088 DNAJC5GQ8N7S2 189 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms