RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 RNF181Q9P0P0 153 aa19.81■□□□□ 0.76
SNX1-214ENST00000625244 MAP2P11137 1827 aaKnown RBP19.79■□□□□ 0.76
SNX1-214ENST00000625244 CCDC87Q9NVE4 849 aa19.79■□□□□ 0.76
SNX1-214ENST00000625244 TMF1P82094 1093 aa19.78■□□□□ 0.76
SNX1-214ENST00000625244 RRS1Q15050 365 aaKnown RBP19.78■□□□□ 0.76
SNX1-214ENST00000625244 PKD1L3Q7Z443 1732 aa19.78■□□□□ 0.76
SNX1-214ENST00000625244 ITGB4P16144 1822 aa19.78■□□□□ 0.76
SNX1-214ENST00000625244 NLGN1Q8N2Q7 840 aa19.77■□□□□ 0.76
SNX1-214ENST00000625244 DCAF5Q96JK2 942 aa19.77■□□□□ 0.76
SNX1-214ENST00000625244 RTL1A6NKG5 1358 aa19.77■□□□□ 0.76
SNX1-214ENST00000625244 BRCA1P38398 1863 aaKnown RBP19.77■□□□□ 0.76
SNX1-214ENST00000625244 ATP6V1AP38606 617 aa19.76■□□□□ 0.75
SNX1-214ENST00000625244 ASAP1Q9ULH1 1129 aa19.76■□□□□ 0.75
SNX1-214ENST00000625244 TRAPPC3LQ5T215 181 aa19.75■□□□□ 0.75
SNX1-214ENST00000625244 PIM2Q9P1W9 311 aa19.75■□□□□ 0.75
SNX1-214ENST00000625244 TNRC6CQ9HCJ0 1690 aaKnown RBP19.75■□□□□ 0.75
SNX1-214ENST00000625244 DALRD3Q5D0E6 543 aaKnown RBP19.74■□□□□ 0.75
SNX1-214ENST00000625244 ARFGEF1Q9Y6D6 1849 aa19.74■□□□□ 0.75
SNX1-214ENST00000625244 NKX1-1Q15270 411 aaPredicted RBP19.73■□□□□ 0.75
SNX1-214ENST00000625244 PARP3Q9Y6F1 533 aa19.73■□□□□ 0.75
SNX1-214ENST00000625244 SMG6Q86US8 1419 aaKnown RBP19.73■□□□□ 0.75
SNX1-214ENST00000625244 C4AP0C0L4 1744 aa19.72■□□□□ 0.75
SNX1-214ENST00000625244 GYS1P13807 737 aa19.72■□□□□ 0.75
SNX1-214ENST00000625244 HSP90AB2PQ58FF8 381 aa19.72■□□□□ 0.75
SNX1-214ENST00000625244 ARHGEF1Q92888 912 aaKnown RBP19.72■□□□□ 0.75
SNX1-214ENST00000625244 RTCBQ9Y3I0 505 aaKnown RBP19.72■□□□□ 0.75
SNX1-214ENST00000625244 TMOD3Q9NYL9 352 aa19.7■□□□□ 0.74
SNX1-214ENST00000625244 VEGFAP15692 232 aaPredicted RBP19.69■□□□□ 0.74
SNX1-214ENST00000625244 ATG3Q9NT62 314 aa19.69■□□□□ 0.74
SNX1-214ENST00000625244 SBF1O95248 1867 aa19.68■□□□□ 0.74
SNX1-214ENST00000625244 INSRP06213 1382 aa19.68■□□□□ 0.74
SNX1-214ENST00000625244 GLTPD2A6NH11 291 aa19.67■□□□□ 0.74
SNX1-214ENST00000625244 FOXN1O15353 648 aa19.67■□□□□ 0.74
SNX1-214ENST00000625244 CHRNA5P30532 468 aa19.67■□□□□ 0.74
SNX1-214ENST00000625244 RASSF7Q02833 373 aa19.67■□□□□ 0.74
SNX1-214ENST00000625244 SLC4A9Q96Q91 983 aa19.67■□□□□ 0.74
SNX1-214ENST00000625244 ADRA2BP18089 450 aa19.66■□□□□ 0.74
SNX1-214ENST00000625244 RFC4P35249 363 aa19.66■□□□□ 0.74
SNX1-214ENST00000625244 PUS7Q96PZ0 661 aaKnown RBP19.66■□□□□ 0.74
SNX1-214ENST00000625244 PCDH10Q9P2E7 1040 aa19.66■□□□□ 0.74
SNX1-214ENST00000625244 MKRN1Q9UHC7 482 aaKnown RBP19.66■□□□□ 0.74
SNX1-214ENST00000625244 ZC3H4Q9UPT8 1303 aaKnown RBP19.66■□□□□ 0.74
SNX1-214ENST00000625244 SIN3AQ96ST3 1273 aa19.65■□□□□ 0.74
SNX1-214ENST00000625244 GGNBP2Q9H3C7 697 aa19.65■□□□□ 0.74
SNX1-214ENST00000625244 FAM161AQ3B820 660 aa19.64■□□□□ 0.73
SNX1-214ENST00000625244 CARD11Q9BXL7 1154 aa19.64■□□□□ 0.73
SNX1-214ENST00000625244 PRDM10Q9NQV6 1147 aa19.64■□□□□ 0.73
SNX1-214ENST00000625244 KDRP35968 1356 aa19.64■□□□□ 0.73
SNX1-214ENST00000625244 KDM6AO15550 1401 aaPredicted RBP19.64■□□□□ 0.73
SNX1-214ENST00000625244 POTECB2RU33 542 aa19.63■□□□□ 0.73
SNX1-214ENST00000625244 FYB1O15117 783 aa19.63■□□□□ 0.73
SNX1-214ENST00000625244 DDR1Q08345 913 aa19.63■□□□□ 0.73
SNX1-214ENST00000625244 RC3H1Q5TC82 1133 aaKnown RBP19.63■□□□□ 0.73
SNX1-214ENST00000625244 SPG7Q9UQ90 795 aa19.63■□□□□ 0.73
SNX1-214ENST00000625244 RPS6KA4O75676 772 aa19.62■□□□□ 0.73
SNX1-214ENST00000625244 FLT4P35916 1363 aa19.61■□□□□ 0.73
SNX1-214ENST00000625244 CNTNAP4Q9C0A0 1308 aa19.61■□□□□ 0.73
SNX1-214ENST00000625244 LMNB1P20700 586 aa19.61■□□□□ 0.73
SNX1-214ENST00000625244 FKBP8Q14318 412 aa19.61■□□□□ 0.73
SNX1-214ENST00000625244 CREBZFQ9NS37 354 aa19.61■□□□□ 0.73
SNX1-214ENST00000625244 SRP68Q9UHB9 627 aaKnown RBP19.61■□□□□ 0.73
SNX1-214ENST00000625244 RBM42Q9BTD8 480 aaKnown RBP19.6■□□□□ 0.73
SNX1-214ENST00000625244 PHKG2P15735 406 aa19.59■□□□□ 0.73
SNX1-214ENST00000625244 NCAPD2Q15021 1401 aa19.59■□□□□ 0.73
SNX1-214ENST00000625244 NEUROD1Q13562 356 aa19.58■□□□□ 0.72
SNX1-214ENST00000625244 CTCFP49711 727 aaPredicted RBP19.57■□□□□ 0.72
SNX1-214ENST00000625244 IFNL2Q8IZJ0 200 aa19.57■□□□□ 0.72
SNX1-214ENST00000625244 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.57■□□□□ 0.726e-7■□□□□ 10
SNX1-214ENST00000625244 CNTNAP1P78357 1384 aa19.56■□□□□ 0.72
SNX1-214ENST00000625244 KIF24Q5T7B8 1368 aa19.56■□□□□ 0.72
SNX1-214ENST00000625244 POLRMTO00411 1230 aaKnown RBP19.55■□□□□ 0.72
SNX1-214ENST00000625244 ABHD8Q96I13 439 aa19.55■□□□□ 0.72
SNX1-214ENST00000625244 EMILIN1Q9Y6C2 1016 aa19.55■□□□□ 0.72
SNX1-214ENST00000625244 MYH14Q7Z406 1995 aaKnown RBP19.55■□□□□ 0.72
SNX1-214ENST00000625244 USP42Q9H9J4 1324 aaKnown RBP19.54■□□□□ 0.72
SNX1-214ENST00000625244 COL5A3P25940 1745 aaPredicted RBP19.54■□□□□ 0.72
SNX1-214ENST00000625244 LBX1P52954 281 aa19.54■□□□□ 0.72
SNX1-214ENST00000625244 AIDAQ96BJ3 306 aa19.54■□□□□ 0.72
SNX1-214ENST00000625244 TESK2Q96S53 571 aa19.54■□□□□ 0.72
SNX1-214ENST00000625244 TONSLQ96HA7 1378 aa19.54■□□□□ 0.72
SNX1-214ENST00000625244 POTEIP0CG38 1075 aa19.53■□□□□ 0.72
SNX1-214ENST00000625244 POTEJP0CG39 1038 aa19.53■□□□□ 0.72
SNX1-214ENST00000625244 TM4SF1P30408 202 aa19.53■□□□□ 0.72
SNX1-214ENST00000625244 CHADLQ6NUI6 762 aa19.53■□□□□ 0.72
SNX1-214ENST00000625244 ZNF831Q5JPB2 1677 aa19.52■□□□□ 0.72
SNX1-214ENST00000625244 NFKBIEO00221 500 aa19.52■□□□□ 0.72
SNX1-214ENST00000625244 EYA1Q99502 592 aa19.52■□□□□ 0.72
SNX1-214ENST00000625244 CRKLP46109 303 aaKnown RBP19.51■□□□□ 0.71
SNX1-214ENST00000625244 VEGFBP49765 207 aa19.51■□□□□ 0.71
SNX1-214ENST00000625244 TIAM2Q8IVF5 1701 aa19.51■□□□□ 0.71
SNX1-214ENST00000625244 ERVV-2B6SEH9 535 aa19.5■□□□□ 0.71
SNX1-214ENST00000625244 DPY19L2Q6NUT2 758 aa19.5■□□□□ 0.71
SNX1-214ENST00000625244 WBP1LQ9NX94 342 aa19.5■□□□□ 0.71
SNX1-214ENST00000625244 PPM1GO15355 546 aaPredicted RBP19.49■□□□□ 0.71
SNX1-214ENST00000625244 MLLT1Q03111 559 aaPredicted RBP19.48■□□□□ 0.71
SNX1-214ENST00000625244 TTLL6Q8N841 843 aa19.48■□□□□ 0.71
SNX1-214ENST00000625244 PASKQ96RG2 1323 aa19.48■□□□□ 0.71
SNX1-214ENST00000625244 PTCD1O75127 700 aaKnown RBP19.47■□□□□ 0.71
SNX1-214ENST00000625244 CCDC88AQ3V6T2 1871 aa19.46■□□□□ 0.71
SNX1-214ENST00000625244 TNRC18O15417 2968 aaPredicted RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms