RNA–Protein interactions for RNA: ENST00000625171.3

LINC00963-220, long intergenic non-protein coding RNA 963, humanhuman

TSL 5

Gene LINC00963, Length 830 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-220ENST00000625171 CHMP4AQ9BY43 222 aa15.18■□□□□ 0.02
LINC00963-220ENST00000625171 PDE3AQ14432 1141 aa15.17■□□□□ 0.02
LINC00963-220ENST00000625171 PCDH11XQ9BZA7 1347 aa15.17■□□□□ 0.02
LINC00963-220ENST00000625171 PCDH11YQ9BZA8 1340 aa15.17■□□□□ 0.02
LINC00963-220ENST00000625171 PSDA5PKW4 1024 aaPredicted RBP15.16■□□□□ 0.02
LINC00963-220ENST00000625171 CYP27B1O15528 508 aa15.16■□□□□ 0.02
LINC00963-220ENST00000625171 FKBP8Q14318 412 aa15.16■□□□□ 0.02
LINC00963-220ENST00000625171 BARGINQ6ZT62 677 aa15.16■□□□□ 0.02
LINC00963-220ENST00000625171 LGR6Q9HBX8 967 aa15.16■□□□□ 0.02
LINC00963-220ENST00000625171 STRN4Q9NRL3 753 aa15.16■□□□□ 0.02
LINC00963-220ENST00000625171 PARP4Q9UKK3 1724 aaKnown RBP15.16■□□□□ 0.02
LINC00963-220ENST00000625171 NRAPQ86VF7 1730 aa15.15■□□□□ 0.02
LINC00963-220ENST00000625171 A0A0G2JS52 829 aa15.15■□□□□ 0.02
LINC00963-220ENST00000625171 HOXB7P09629 217 aa15.15■□□□□ 0.02
LINC00963-220ENST00000625171 MYT1Q01538 1121 aa15.15■□□□□ 0.02
LINC00963-220ENST00000625171 ARHGAP45Q92619 1136 aa15.15■□□□□ 0.02
LINC00963-220ENST00000625171 SPATA31A1Q5TZJ5 1347 aa15.15■□□□□ 0.02
LINC00963-220ENST00000625171 SPATA31A5Q5VU36 1347 aa15.15■□□□□ 0.02
LINC00963-220ENST00000625171 SPATA31A7Q8IWB4 1347 aa15.15■□□□□ 0.02
LINC00963-220ENST00000625171 ERVV-2B6SEH9 535 aa15.14■□□□□ 0.01
LINC00963-220ENST00000625171 MS4A1P11836 297 aa15.14■□□□□ 0.01
LINC00963-220ENST00000625171 TEFQ10587 303 aa15.14■□□□□ 0.01
LINC00963-220ENST00000625171 FAM98CQ17RN3 349 aaKnown RBP15.14■□□□□ 0.01
LINC00963-220ENST00000625171 TWISTNBQ3B726 338 aaPredicted RBP15.14■□□□□ 0.01
LINC00963-220ENST00000625171 TSPYL4Q9UJ04 414 aa15.14■□□□□ 0.01
LINC00963-220ENST00000625171 LAS1LQ9Y4W2 734 aaKnown RBP15.14■□□□□ 0.01
LINC00963-220ENST00000625171 HEG1Q9ULI3 1381 aa15.13■□□□□ 0.01
LINC00963-220ENST00000625171 BCAR3O75815 825 aa15.13■□□□□ 0.01
LINC00963-220ENST00000625171 AAMPQ13685 434 aa15.13■□□□□ 0.01
LINC00963-220ENST00000625171 MPRIPQ6WCQ1 1025 aa15.13■□□□□ 0.01
LINC00963-220ENST00000625171 C8orf58Q8NAV2 365 aa15.13■□□□□ 0.01
LINC00963-220ENST00000625171 MRC1P22897 1456 aa15.13■□□□□ 0.01
LINC00963-220ENST00000625171 KDM6AO15550 1401 aaPredicted RBP15.12■□□□□ 0.01
LINC00963-220ENST00000625171 TSPYL6Q8N831 410 aa15.12■□□□□ 0.01
LINC00963-220ENST00000625171 SSH1Q8WYL5 1049 aa15.12■□□□□ 0.01
LINC00963-220ENST00000625171 SLC52A2Q9HAB3 445 aa15.12■□□□□ 0.01
LINC00963-220ENST00000625171 KIF16BQ96L93 1317 aa15.12■□□□□ 0.01
LINC00963-220ENST00000625171 IPO8O15397 1037 aaKnown RBP15.11■□□□□ 0.01
LINC00963-220ENST00000625171 EN1Q05925 392 aaPredicted RBP15.11■□□□□ 0.01
LINC00963-220ENST00000625171 THSD7AQ9UPZ6 1657 aa15.1■□□□□ 0.01
LINC00963-220ENST00000625171 BTBD11A6QL63 1104 aa15.1■□□□□ 0.01
LINC00963-220ENST00000625171 EIF4A1P60842 406 aaKnown RBP15.1■□□□□ 0.01
LINC00963-220ENST00000625171 SCN11AQ9UI33 1791 aa15.1■□□□□ 0.01
LINC00963-220ENST00000625171 EXOC5O00471 708 aa15.09■□□□□ 0.01
LINC00963-220ENST00000625171 R3HDM1Q15032 1099 aaKnown RBP15.09■□□□□ 0.01
LINC00963-220ENST00000625171 ZKSCAN2Q63HK3 967 aa15.09■□□□□ 0.01
LINC00963-220ENST00000625171 MRPL50Q8N5N7 158 aaKnown RBP15.09■□□□□ 0.01
LINC00963-220ENST00000625171 PPP4R2Q9NY27 417 aa15.09■□□□□ 0.01
LINC00963-220ENST00000625171 SIPA1L3O60292 1781 aaPredicted RBP15.08■□□□□ 0.01
LINC00963-220ENST00000625171 SMC4Q9NTJ3 1288 aa15.08■□□□□ 0
LINC00963-220ENST00000625171 TNS1Q9HBL0 1735 aaKnown RBP15.08■□□□□ 0
LINC00963-220ENST00000625171 KDM3BQ7LBC6 1761 aa15.07■□□□□ 0
LINC00963-220ENST00000625171 MIS18AQ9NYP9 233 aa15.07■□□□□ 0
LINC00963-220ENST00000625171 PLIN1O60240 522 aa15.06■□□□□ 0
LINC00963-220ENST00000625171 CCDC30Q5VVM6 783 aa15.06■□□□□ 0
LINC00963-220ENST00000625171 ZNF790Q6PG37 636 aa15.06■□□□□ 0
LINC00963-220ENST00000625171 ATF7IPQ6VMQ6 1270 aa15.06■□□□□ 0
LINC00963-220ENST00000625171 FAM196AQ6ZSG2 479 aa15.06■□□□□ 0
LINC00963-220ENST00000625171 NFATC2IPQ8NCF5 419 aa15.06■□□□□ 0
LINC00963-220ENST00000625171 TNS2Q63HR2 1409 aa15.06■□□□□ 0
LINC00963-220ENST00000625171 CABP4P57796 275 aa15.05■□□□□ -0
LINC00963-220ENST00000625171 CAMKK2Q96RR4 588 aa15.05■□□□□ -0
LINC00963-220ENST00000625171 SHANK3Q9BYB0 1731 aa15.05■□□□□ -0
LINC00963-220ENST00000625171 PTPRCP08575 1304 aa15.04■□□□□ -0
LINC00963-220ENST00000625171 GIGYF1O75420 1035 aaPredicted RBP15.04■□□□□ -0
LINC00963-220ENST00000625171 EZH2Q15910 746 aaKnown RBP15.04■□□□□ -0
LINC00963-220ENST00000625171 USP35Q9P2H5 1018 aa15.04■□□□□ -0
LINC00963-220ENST00000625171 NOB1Q9ULX3 412 aaKnown RBP15.04■□□□□ -0
LINC00963-220ENST00000625171 ELL2O00472 640 aaPredicted RBP15.03■□□□□ -0
LINC00963-220ENST00000625171 DDB1Q16531 1140 aa15.03■□□□□ -0
LINC00963-220ENST00000625171 KRT24Q2M2I5 525 aa15.03■□□□□ -0
LINC00963-220ENST00000625171 FAM182BQ5T319 152 aa15.03■□□□□ -0
LINC00963-220ENST00000625171 DZIP1LQ8IYY4 767 aaKnown RBP15.03■□□□□ -0
LINC00963-220ENST00000625171 API5Q9BZZ5 524 aaKnown RBP15.03■□□□□ -0
LINC00963-220ENST00000625171 VIRMAQ69YN4 1812 aaKnown RBP15.03■□□□□ -0
LINC00963-220ENST00000625171 WNK3Q9BYP7 1800 aa15.03■□□□□ -0
LINC00963-220ENST00000625171 TRIM27P14373 513 aa15.02■□□□□ -0
LINC00963-220ENST00000625171 C20orf194Q5TEA3 1177 aa15.02■□□□□ -0
LINC00963-220ENST00000625171 DDX54Q8TDD1 881 aaKnown RBP15.02■□□□□ -0
LINC00963-220ENST00000625171 CACNA1FO60840 1977 aa15.02□□□□□ -0.01
LINC00963-220ENST00000625171 BCL9O00512 1426 aa15.01□□□□□ -0.01
LINC00963-220ENST00000625171 IRX6P78412 446 aaPredicted RBP15.01□□□□□ -0.01
LINC00963-220ENST00000625171 EXOC6Q8TAG9 804 aa15.01□□□□□ -0.01
LINC00963-220ENST00000625171 FRAT1Q92837 279 aaPredicted RBP15.01□□□□□ -0.01
LINC00963-220ENST00000625171 BCL2L13Q9BXK5 485 aa15.01□□□□□ -0.01
LINC00963-220ENST00000625171 STK31Q9BXU1 1019 aa15.01□□□□□ -0.01
LINC00963-220ENST00000625171 CHMP4BQ9H444 224 aaKnown RBP15.01□□□□□ -0.01
LINC00963-220ENST00000625171 KCNQ3O43525 872 aa15□□□□□ -0.01
LINC00963-220ENST00000625171 TRIM37O94972 964 aa15□□□□□ -0.01
LINC00963-220ENST00000625171 SLC4A2P04920 1241 aa15□□□□□ -0.01
LINC00963-220ENST00000625171 CANXP27824 592 aaKnown RBP15□□□□□ -0.01
LINC00963-220ENST00000625171 FMNL2Q96PY5 1086 aa15□□□□□ -0.01
LINC00963-220ENST00000625171 CRBNQ96SW2 442 aa15□□□□□ -0.01
LINC00963-220ENST00000625171 ABCC4O15439 1325 aa14.99□□□□□ -0.01
LINC00963-220ENST00000625171 APBA3O96018 575 aa14.99□□□□□ -0.01
LINC00963-220ENST00000625171 SNRPA1P09661 255 aaKnown RBP14.99□□□□□ -0.01
LINC00963-220ENST00000625171 MVPQ14764 893 aaKnown RBP14.99□□□□□ -0.01
LINC00963-220ENST00000625171 VSIG10Q8N0Z9 540 aa14.99□□□□□ -0.01
LINC00963-220ENST00000625171 ERBB4Q15303 1308 aa14.98□□□□□ -0.01
LINC00963-220ENST00000625171 RREB1Q92766 1687 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms