RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 CDCA7Q9BWT1 371 aaPredicted RBP13.77□□□□□ -0.21
CPNE3-212ENST00000621783 PPP4R3CPQ6ZMV5 832 aa13.76□□□□□ -0.21
CPNE3-212ENST00000621783 TSPYL6Q8N831 410 aa13.76□□□□□ -0.21
CPNE3-212ENST00000621783 C8orf58Q8NAV2 365 aa13.76□□□□□ -0.21
CPNE3-212ENST00000621783 DDX54Q8TDD1 881 aaKnown RBP13.76□□□□□ -0.21
CPNE3-212ENST00000621783 BCAR3O75815 825 aa13.75□□□□□ -0.21
CPNE3-212ENST00000621783 IRX6P78412 446 aaPredicted RBP13.75□□□□□ -0.21
CPNE3-212ENST00000621783 NKX1-1Q15270 411 aaPredicted RBP13.75□□□□□ -0.21
CPNE3-212ENST00000621783 KRT24Q2M2I5 525 aa13.75□□□□□ -0.21
CPNE3-212ENST00000621783 TWISTNBQ3B726 338 aaPredicted RBP13.75□□□□□ -0.21
CPNE3-212ENST00000621783 SLC52A2Q9HAB3 445 aa13.75□□□□□ -0.21
CPNE3-212ENST00000621783 DOT1LQ8TEK3 1739 aa13.75□□□□□ -0.21
CPNE3-212ENST00000621783 BTBD11A6QL63 1104 aa13.74□□□□□ -0.21
CPNE3-212ENST00000621783 VAMP4O75379 141 aa13.74□□□□□ -0.21
CPNE3-212ENST00000621783 FKBP8Q14318 412 aa13.74□□□□□ -0.21
CPNE3-212ENST00000621783 FBXO41Q8TF61 875 aa13.74□□□□□ -0.21
CPNE3-212ENST00000621783 BCL2L13Q9BXK5 485 aa13.74□□□□□ -0.21
CPNE3-212ENST00000621783 ELL2O00472 640 aaPredicted RBP13.73□□□□□ -0.21
CPNE3-212ENST00000621783 DDB1Q16531 1140 aa13.73□□□□□ -0.21
CPNE3-212ENST00000621783 ZNF428Q96B54 188 aa13.73□□□□□ -0.21
CPNE3-212ENST00000621783 SMC4Q9NTJ3 1288 aa13.73□□□□□ -0.21
CPNE3-212ENST00000621783 EXOC5O00471 708 aa13.72□□□□□ -0.21
CPNE3-212ENST00000621783 KCNQ3O43525 872 aa13.72□□□□□ -0.21
CPNE3-212ENST00000621783 PLIN1O60240 522 aa13.72□□□□□ -0.21
CPNE3-212ENST00000621783 CABP4P57796 275 aa13.72□□□□□ -0.21
CPNE3-212ENST00000621783 FAM98CQ17RN3 349 aaKnown RBP13.72□□□□□ -0.21
CPNE3-212ENST00000621783 ALDH1L2Q3SY69 923 aa13.72□□□□□ -0.21
CPNE3-212ENST00000621783 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.72□□□□□ -0.21
CPNE3-212ENST00000621783 SSH1Q8WYL5 1049 aa13.72□□□□□ -0.21
CPNE3-212ENST00000621783 UBR2Q8IWV8 1755 aa13.72□□□□□ -0.21
CPNE3-212ENST00000621783 C5P01031 1676 aa13.72□□□□□ -0.21
CPNE3-212ENST00000621783 ITGB4P16144 1822 aa13.71□□□□□ -0.21
CPNE3-212ENST00000621783 ERVV-2B6SEH9 535 aa13.71□□□□□ -0.21
CPNE3-212ENST00000621783 KCNA4P22459 653 aa13.71□□□□□ -0.21
CPNE3-212ENST00000621783 EIF4A1P60842 406 aaKnown RBP13.71□□□□□ -0.21
CPNE3-212ENST00000621783 NFATC2IPQ8NCF5 419 aa13.71□□□□□ -0.21
CPNE3-212ENST00000621783 TRPC5Q9UL62 973 aaPredicted RBP13.71□□□□□ -0.21
CPNE3-212ENST00000621783 SOS1Q07889 1333 aaPredicted RBP13.7□□□□□ -0.22
CPNE3-212ENST00000621783 KCPQ6ZWJ8 1503 aa13.69□□□□□ -0.22
CPNE3-212ENST00000621783 KIF16BQ96L93 1317 aa13.69□□□□□ -0.22
CPNE3-212ENST00000621783 LAMB4A4D0S4 1761 aa13.69□□□□□ -0.22
CPNE3-212ENST00000621783 CANXP27824 592 aaKnown RBP13.69□□□□□ -0.22
CPNE3-212ENST00000621783 GJD4Q96KN9 370 aaPredicted RBP13.69□□□□□ -0.22
CPNE3-212ENST00000621783 HEG1Q9ULI3 1381 aa13.69□□□□□ -0.22
CPNE3-212ENST00000621783 TCERG1O14776 1098 aaKnown RBP13.68□□□□□ -0.22
CPNE3-212ENST00000621783 BRPF1P55201 1214 aaPredicted RBP13.68□□□□□ -0.22
CPNE3-212ENST00000621783 SLC39A6Q13433 755 aa13.68□□□□□ -0.22
CPNE3-212ENST00000621783 C20orf194Q5TEA3 1177 aa13.68□□□□□ -0.22
CPNE3-212ENST00000621783 ZNF790Q6PG37 636 aa13.68□□□□□ -0.22
CPNE3-212ENST00000621783 MRPL50Q8N5N7 158 aaKnown RBP13.68□□□□□ -0.22
CPNE3-212ENST00000621783 MARCH10Q8NA82 808 aaPredicted RBP13.68□□□□□ -0.22
CPNE3-212ENST00000621783 FRAT1Q92837 279 aaPredicted RBP13.68□□□□□ -0.22
CPNE3-212ENST00000621783 A0A0G2JS52 829 aa13.67□□□□□ -0.22
CPNE3-212ENST00000621783 HOXB7P09629 217 aa13.67□□□□□ -0.22
CPNE3-212ENST00000621783 MYT1Q01538 1121 aa13.67□□□□□ -0.22
CPNE3-212ENST00000621783 TMOD3Q9NYL9 352 aa13.67□□□□□ -0.22
CPNE3-212ENST00000621783 BCL9O00512 1426 aa13.66□□□□□ -0.22
CPNE3-212ENST00000621783 TTC5Q8N0Z6 440 aa13.66□□□□□ -0.22
CPNE3-212ENST00000621783 ERICH6BQ5W0A0 696 aa13.65□□□□□ -0.22
CPNE3-212ENST00000621783 ZKSCAN2Q63HK3 967 aa13.65□□□□□ -0.22
CPNE3-212ENST00000621783 CRBNQ96SW2 442 aa13.65□□□□□ -0.22
CPNE3-212ENST00000621783 QTRT2Q9H974 415 aaKnown RBP13.65□□□□□ -0.22
CPNE3-212ENST00000621783 NOB1Q9ULX3 412 aaKnown RBP13.65□□□□□ -0.22
CPNE3-212ENST00000621783 TNNQ9UQP3 1299 aa13.65□□□□□ -0.22
CPNE3-212ENST00000621783 NHSQ6T4R5 1651 aa13.64□□□□□ -0.23
CPNE3-212ENST00000621783 GIGYF1O75420 1035 aaPredicted RBP13.64□□□□□ -0.23
CPNE3-212ENST00000621783 HDGFL1Q5TGJ6 251 aa13.64□□□□□ -0.23
CPNE3-212ENST00000621783 CCDC30Q5VVM6 783 aa13.64□□□□□ -0.23
CPNE3-212ENST00000621783 NECTIN2Q92692 538 aa13.64□□□□□ -0.23
CPNE3-212ENST00000621783 ZNF496Q96IT1 587 aaPredicted RBP13.64□□□□□ -0.23
CPNE3-212ENST00000621783 FMNL2Q96PY5 1086 aa13.64□□□□□ -0.23
CPNE3-212ENST00000621783 PRAMEF22A3QJZ6 481 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 ONECUT3O60422 494 aaPredicted RBP13.63□□□□□ -0.23
CPNE3-212ENST00000621783 TRIM27P14373 513 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 PDE3AQ14432 1141 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 ZNF772Q68DY9 489 aaPredicted RBP13.63□□□□□ -0.23
CPNE3-212ENST00000621783 ATF7IPQ6VMQ6 1270 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 EXOC6Q8TAG9 804 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 PANK1Q8TE04 598 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 PIGBQ92521 554 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 STK31Q9BXU1 1019 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 RGS12O14924 1447 aa13.63□□□□□ -0.23
CPNE3-212ENST00000621783 IPO8O15397 1037 aaKnown RBP13.62□□□□□ -0.23
CPNE3-212ENST00000621783 SEPT12Q8IYM1 358 aa13.62□□□□□ -0.23
CPNE3-212ENST00000621783 BRWD3Q6RI45 1802 aa13.62□□□□□ -0.23
CPNE3-212ENST00000621783 TJP1Q07157 1748 aa13.61□□□□□ -0.23
CPNE3-212ENST00000621783 RLBP1P12271 317 aa13.61□□□□□ -0.23
CPNE3-212ENST00000621783 EIF2S2P20042 333 aaKnown RBP13.61□□□□□ -0.23
CPNE3-212ENST00000621783 PRIM1P49642 420 aaKnown RBP13.61□□□□□ -0.23
CPNE3-212ENST00000621783 DZIP1LQ8IYY4 767 aaKnown RBP13.61□□□□□ -0.23
CPNE3-212ENST00000621783 ARHGAP45Q92619 1136 aa13.61□□□□□ -0.23
CPNE3-212ENST00000621783 SYTL4Q96C24 671 aaPredicted RBP13.61□□□□□ -0.23
CPNE3-212ENST00000621783 ACSBG1Q96GR2 724 aa13.61□□□□□ -0.23
CPNE3-212ENST00000621783 CACNA1FO60840 1977 aa13.61□□□□□ -0.23
CPNE3-212ENST00000621783 CICQ96RK0 1608 aaPredicted RBP13.61□□□□□ -0.23
CPNE3-212ENST00000621783 SLC4A2P04920 1241 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 SNRPA1P09661 255 aaKnown RBP13.6□□□□□ -0.23
CPNE3-212ENST00000621783 MS4A1P11836 297 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 G2E3Q7L622 706 aa13.6□□□□□ -0.23
CPNE3-212ENST00000621783 FTSJ3Q8IY81 847 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms