RNA–Protein interactions for RNA: ENST00000616395.4

TRAPPC3-209, Transcript of trafficking protein particle complex 3, humanhuman

TSL 3 BASIC

Gene TRAPPC3, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-209ENST00000616395 FCHSD2O94868 740 aa24.6■■□□□ 1.53
TRAPPC3-209ENST00000616395 PRELPP51888 382 aa24.6■■□□□ 1.53
TRAPPC3-209ENST00000616395 FSTL1Q12841 308 aa24.6■■□□□ 1.53
TRAPPC3-209ENST00000616395 C9orf131Q5VYM1 1079 aa24.6■■□□□ 1.53
TRAPPC3-209ENST00000616395 GGNBP2Q9H3C7 697 aa24.6■■□□□ 1.53
TRAPPC3-209ENST00000616395 C10orf71Q711Q0 1435 aa24.59■■□□□ 1.53
TRAPPC3-209ENST00000616395 DPEP1P16444 411 aa24.59■■□□□ 1.53
TRAPPC3-209ENST00000616395 FYB1O15117 783 aa24.58■■□□□ 1.52
TRAPPC3-209ENST00000616395 NKX1-1Q15270 411 aaPredicted RBP24.58■■□□□ 1.52
TRAPPC3-209ENST00000616395 ASAP1Q9ULH1 1129 aa24.58■■□□□ 1.52
TRAPPC3-209ENST00000616395 ATP6V1AP38606 617 aa24.57■■□□□ 1.52
TRAPPC3-209ENST00000616395 PKD1L3Q7Z443 1732 aa24.56■■□□□ 1.52
TRAPPC3-209ENST00000616395 TMF1P82094 1093 aa24.55■■□□□ 1.52
TRAPPC3-209ENST00000616395 NLGN1Q8N2Q7 840 aa24.55■■□□□ 1.52
TRAPPC3-209ENST00000616395 TESK2Q96S53 571 aa24.55■■□□□ 1.52
TRAPPC3-209ENST00000616395 TMOD3Q9NYL9 352 aa24.55■■□□□ 1.52
TRAPPC3-209ENST00000616395 FLT4P35916 1363 aa24.55■■□□□ 1.52
TRAPPC3-209ENST00000616395 PLEKHG2Q9H7P9 1386 aa24.55■■□□□ 1.52
TRAPPC3-209ENST00000616395 KCPQ6ZWJ8 1503 aa24.54■■□□□ 1.52
TRAPPC3-209ENST00000616395 TONSLQ96HA7 1378 aa24.53■■□□□ 1.52
TRAPPC3-209ENST00000616395 KDM2BQ8NHM5 1336 aa24.53■■□□□ 1.52
TRAPPC3-209ENST00000616395 TRAPPC3LQ5T215 181 aa24.53■■□□□ 1.52
TRAPPC3-209ENST00000616395 CCDC87Q9NVE4 849 aa24.53■■□□□ 1.52
TRAPPC3-209ENST00000616395 KCNA3P22001 575 aa24.52■■□□□ 1.52
TRAPPC3-209ENST00000616395 SPG7Q9UQ90 795 aa24.52■■□□□ 1.52
TRAPPC3-209ENST00000616395 RTCBQ9Y3I0 505 aaKnown RBP24.52■■□□□ 1.52
TRAPPC3-209ENST00000616395 PCNTO95613 3336 aa24.52■■□□□ 1.52
TRAPPC3-209ENST00000616395 RRAGCQ9HB90 399 aa24.51■■□□□ 1.51
TRAPPC3-209ENST00000616395 ATG3Q9NT62 314 aa24.51■■□□□ 1.51
TRAPPC3-209ENST00000616395 C4AP0C0L4 1744 aa24.5■■□□□ 1.51
TRAPPC3-209ENST00000616395 KIF24Q5T7B8 1368 aa24.49■■□□□ 1.51
TRAPPC3-209ENST00000616395 BRCA1P38398 1863 aaKnown RBP24.49■■□□□ 1.51
TRAPPC3-209ENST00000616395 ARHGEF1Q92888 912 aaKnown RBP24.49■■□□□ 1.51
TRAPPC3-209ENST00000616395 RNF181Q9P0P0 153 aa24.49■■□□□ 1.51
TRAPPC3-209ENST00000616395 ST20-MTHFSA0A0A6YYL1 179 aa24.48■■□□□ 1.51
TRAPPC3-209ENST00000616395 GYS1P13807 737 aa24.48■■□□□ 1.51
TRAPPC3-209ENST00000616395 PARP3Q9Y6F1 533 aa24.48■■□□□ 1.51
TRAPPC3-209ENST00000616395 NCAPD2Q15021 1401 aa24.48■■□□□ 1.51
TRAPPC3-209ENST00000616395 SMC1BQ8NDV3 1235 aa24.46■■□□□ 1.51
TRAPPC3-209ENST00000616395 DCAF5Q96JK2 942 aa24.46■■□□□ 1.51
TRAPPC3-209ENST00000616395 PIM2Q9P1W9 311 aa24.46■■□□□ 1.51
TRAPPC3-209ENST00000616395 KDRP35968 1356 aa24.46■■□□□ 1.51
TRAPPC3-209ENST00000616395 SLC4A9Q96Q91 983 aa24.45■■□□□ 1.5
TRAPPC3-209ENST00000616395 EMILIN1Q9Y6C2 1016 aa24.45■■□□□ 1.5
TRAPPC3-209ENST00000616395 ARFGEF1Q9Y6D6 1849 aa24.45■■□□□ 1.5
TRAPPC3-209ENST00000616395 HSPA1AP0DMV8 641 aaKnown RBP24.44■■□□□ 1.5
TRAPPC3-209ENST00000616395 HSPA1BP0DMV9 641 aaKnown RBP24.44■■□□□ 1.5
TRAPPC3-209ENST00000616395 PHKG2P15735 406 aa24.44■■□□□ 1.5
TRAPPC3-209ENST00000616395 ADRA2BP18089 450 aa24.44■■□□□ 1.5
TRAPPC3-209ENST00000616395 RFC4P35249 363 aa24.44■■□□□ 1.5
TRAPPC3-209ENST00000616395 DALRD3Q5D0E6 543 aaKnown RBP24.43■■□□□ 1.5
TRAPPC3-209ENST00000616395 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.43■■□□□ 1.5
TRAPPC3-209ENST00000616395 TNRC6CQ9HCJ0 1690 aaKnown RBP24.43■■□□□ 1.5
TRAPPC3-209ENST00000616395 IFNL2Q8IZJ0 200 aa24.42■■□□□ 1.5
TRAPPC3-209ENST00000616395 RC3H1Q5TC82 1133 aaKnown RBP24.41■■□□□ 1.5
TRAPPC3-209ENST00000616395 RBM42Q9BTD8 480 aaKnown RBP24.41■■□□□ 1.5
TRAPPC3-209ENST00000616395 PPM1GO15355 546 aaPredicted RBP24.4■■□□□ 1.5
TRAPPC3-209ENST00000616395 RPS6KA4O75676 772 aa24.4■■□□□ 1.5
TRAPPC3-209ENST00000616395 CNTNAP4Q9C0A0 1308 aa24.4■■□□□ 1.5
TRAPPC3-209ENST00000616395 KIF20BQ96Q89 1820 aa24.4■■□□□ 1.5
TRAPPC3-209ENST00000616395 SLC24A1O60721 1099 aa24.39■■□□□ 1.5
TRAPPC3-209ENST00000616395 EYA1Q99502 592 aa24.39■■□□□ 1.5
TRAPPC3-209ENST00000616395 CHRNA5P30532 468 aa24.37■■□□□ 1.49
TRAPPC3-209ENST00000616395 ZNF831Q5JPB2 1677 aa24.36■■□□□ 1.49
TRAPPC3-209ENST00000616395 COL5A3P25940 1745 aaPredicted RBP24.36■■□□□ 1.49
TRAPPC3-209ENST00000616395 DDR1Q08345 913 aa24.35■■□□□ 1.49
TRAPPC3-209ENST00000616395 FKBP8Q14318 412 aa24.35■■□□□ 1.49
TRAPPC3-209ENST00000616395 SRP68Q9UHB9 627 aaKnown RBP24.35■■□□□ 1.49
TRAPPC3-209ENST00000616395 TIMELESSQ9UNS1 1208 aa24.34■■□□□ 1.49
TRAPPC3-209ENST00000616395 WASHC2AQ641Q2 1341 aa24.33■■□□□ 1.49
TRAPPC3-209ENST00000616395 SBF1O95248 1867 aa24.33■■□□□ 1.49
TRAPPC3-209ENST00000616395 VEGFAP15692 232 aaPredicted RBP24.33■■□□□ 1.48
TRAPPC3-209ENST00000616395 RASSF7Q02833 373 aa24.33■■□□□ 1.48
TRAPPC3-209ENST00000616395 ERVV-2B6SEH9 535 aa24.32■■□□□ 1.48
TRAPPC3-209ENST00000616395 CARD14Q9BXL6 1004 aa24.32■■□□□ 1.48
TRAPPC3-209ENST00000616395 ZC3H4Q9UPT8 1303 aaKnown RBP24.31■■□□□ 1.48
TRAPPC3-209ENST00000616395 ANKRD26Q9UPS8 1709 aa24.3■■□□□ 1.48
TRAPPC3-209ENST00000616395 GLTPD2A6NH11 291 aa24.3■■□□□ 1.48
TRAPPC3-209ENST00000616395 USP42Q9H9J4 1324 aaKnown RBP24.3■■□□□ 1.48
TRAPPC3-209ENST00000616395 KDM6AO15550 1401 aaPredicted RBP24.3■■□□□ 1.48
TRAPPC3-209ENST00000616395 MYH14Q7Z406 1995 aaKnown RBP24.29■■□□□ 1.48
TRAPPC3-209ENST00000616395 CRKLP46109 303 aaKnown RBP24.28■■□□□ 1.48
TRAPPC3-209ENST00000616395 POLRMTO00411 1230 aaKnown RBP24.27■■□□□ 1.48
TRAPPC3-209ENST00000616395 PTCD1O75127 700 aaKnown RBP24.27■■□□□ 1.48
TRAPPC3-209ENST00000616395 LMNB1P20700 586 aa24.27■■□□□ 1.48
TRAPPC3-209ENST00000616395 TM4SF1P30408 202 aa24.25■■□□□ 1.47
TRAPPC3-209ENST00000616395 CABP4P57796 275 aa24.25■■□□□ 1.47
TRAPPC3-209ENST00000616395 HSP90AB1P08238 724 aaKnown RBP24.24■■□□□ 1.47
TRAPPC3-209ENST00000616395 EIF4A2Q14240 407 aaKnown RBP24.24■■□□□ 1.47
TRAPPC3-209ENST00000616395 POLKQ9UBT6 870 aa24.24■■□□□ 1.47
TRAPPC3-209ENST00000616395 POTECB2RU33 542 aa24.21■■□□□ 1.47
TRAPPC3-209ENST00000616395 CDCA8Q53HL2 280 aa24.19■■□□□ 1.46
TRAPPC3-209ENST00000616395 USPL1Q5W0Q7 1092 aa24.19■■□□□ 1.46
TRAPPC3-209ENST00000616395 ZNF530Q6P9A1 599 aaPredicted RBP24.19■■□□□ 1.46
TRAPPC3-209ENST00000616395 INTS5Q6P9B9 1019 aaKnown RBP24.19■■□□□ 1.46
TRAPPC3-209ENST00000616395 MKRN1Q9UHC7 482 aaKnown RBP24.19■■□□□ 1.46
TRAPPC3-209ENST00000616395 TIAM2Q8IVF5 1701 aa24.19■■□□□ 1.46
TRAPPC3-209ENST00000616395 SLC34A2O95436 690 aa24.18■■□□□ 1.46
TRAPPC3-209ENST00000616395 PLEKHO1Q53GL0 409 aaPredicted RBP24.18■■□□□ 1.46
TRAPPC3-209ENST00000616395 ADAMTS7Q9UKP4 1686 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms