RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KDRP35968 1356 aa25.93■■□□□ 1.74
CDX1-202ENST00000616154 ERVV-2B6SEH9 535 aa25.92■■□□□ 1.74
CDX1-202ENST00000616154 HSP90AB1P08238 724 aaKnown RBP25.92■■□□□ 1.74
CDX1-202ENST00000616154 SMIM5Q71RC9 77 aa25.92■■□□□ 1.74
CDX1-202ENST00000616154 MORC1Q86VD1 984 aa25.92■■□□□ 1.74
CDX1-202ENST00000616154 PLEKHO1Q53GL0 409 aaPredicted RBP25.91■■□□□ 1.74
CDX1-202ENST00000616154 DCAF5Q96JK2 942 aa25.91■■□□□ 1.74
CDX1-202ENST00000616154 GNPATO15228 680 aa25.9■■□□□ 1.74
CDX1-202ENST00000616154 COL5A3P25940 1745 aaPredicted RBP25.9■■□□□ 1.74
CDX1-202ENST00000616154 KDM6AO15550 1401 aaPredicted RBP25.9■■□□□ 1.74
CDX1-202ENST00000616154 AMOTQ4VCS5 1084 aa25.89■■□□□ 1.74
CDX1-202ENST00000616154 ZNF530Q6P9A1 599 aaPredicted RBP25.88■■□□□ 1.73
CDX1-202ENST00000616154 KNSTRNQ9Y448 316 aa25.88■■□□□ 1.73
CDX1-202ENST00000616154 KIF7Q2M1P5 1343 aa25.87■■□□□ 1.73
CDX1-202ENST00000616154 AEBP1Q8IUX7 1158 aa25.87■■□□□ 1.73
CDX1-202ENST00000616154 C1QTNF8P60827 252 aa25.86■■□□□ 1.73
CDX1-202ENST00000616154 SLC4A9Q96Q91 983 aa25.85■■□□□ 1.73
CDX1-202ENST00000616154 SCN11AQ9UI33 1791 aa25.83■■□□□ 1.73
CDX1-202ENST00000616154 KIF13BQ9NQT8 1826 aa25.83■■□□□ 1.73
CDX1-202ENST00000616154 CABP4P57796 275 aa25.83■■□□□ 1.73
CDX1-202ENST00000616154 AMER1Q5JTC6 1135 aaPredicted RBP25.83■■□□□ 1.73
CDX1-202ENST00000616154 RBM42Q9BTD8 480 aaKnown RBP25.83■■□□□ 1.73
CDX1-202ENST00000616154 IL13P35225 146 aa25.82■■□□□ 1.72
CDX1-202ENST00000616154 SULT6B1Q6IMI4 303 aa25.82■■□□□ 1.72
CDX1-202ENST00000616154 RTCBQ9Y3I0 505 aaKnown RBP25.82■■□□□ 1.72
CDX1-202ENST00000616154 MYH14Q7Z406 1995 aaKnown RBP25.82■■□□□ 1.72
CDX1-202ENST00000616154 GIGYF1O75420 1035 aaPredicted RBP25.81■■□□□ 1.72
CDX1-202ENST00000616154 MTHFSP49914 203 aa25.81■■□□□ 1.72
CDX1-202ENST00000616154 C1orf141Q5JVX7 400 aa25.81■■□□□ 1.72
CDX1-202ENST00000616154 RC3H1Q5TC82 1133 aaKnown RBP25.81■■□□□ 1.72
CDX1-202ENST00000616154 CNTNAP4Q9C0A0 1308 aa25.81■■□□□ 1.72
CDX1-202ENST00000616154 CICQ96RK0 1608 aaPredicted RBP25.8■■□□□ 1.72
CDX1-202ENST00000616154 TRAPPC3LQ5T215 181 aa25.8■■□□□ 1.72
CDX1-202ENST00000616154 C4AP0C0L4 1744 aa25.8■■□□□ 1.72
CDX1-202ENST00000616154 ADRA2BP18089 450 aa25.79■■□□□ 1.72
CDX1-202ENST00000616154 ZEB1P37275 1124 aaPredicted RBP25.79■■□□□ 1.72
CDX1-202ENST00000616154 KIAA1551Q9HCM1 1747 aa25.78■■□□□ 1.72
CDX1-202ENST00000616154 MMP10P09238 476 aa25.78■■□□□ 1.72
CDX1-202ENST00000616154 ATP10DQ9P241 1426 aa25.77■■□□□ 1.72
CDX1-202ENST00000616154 TJP1Q07157 1748 aa25.77■■□□□ 1.72
CDX1-202ENST00000616154 VIRMAQ69YN4 1812 aaKnown RBP25.76■■□□□ 1.71
CDX1-202ENST00000616154 ADCY9O60503 1353 aa25.75■■□□□ 1.71
CDX1-202ENST00000616154 SENP3-EIF4A1A0A087X0R7 540 aa25.75■■□□□ 1.71
CDX1-202ENST00000616154 RPS6KA4O75676 772 aa25.75■■□□□ 1.71
CDX1-202ENST00000616154 NLGN1Q8N2Q7 840 aa25.75■■□□□ 1.71
CDX1-202ENST00000616154 NFATC2IPQ8NCF5 419 aa25.75■■□□□ 1.71
CDX1-202ENST00000616154 ARHGEF1Q92888 912 aaKnown RBP25.75■■□□□ 1.71
CDX1-202ENST00000616154 PER1O15534 1290 aaPredicted RBP25.73■■□□□ 1.71
CDX1-202ENST00000616154 PXDNLA1KZ92 1463 aa25.73■■□□□ 1.71
CDX1-202ENST00000616154 N4BP2Q86UW6 1770 aaPredicted RBP25.73■■□□□ 1.71
CDX1-202ENST00000616154 C10orf71Q711Q0 1435 aa25.73■■□□□ 1.71
CDX1-202ENST00000616154 PTCD1O75127 700 aaKnown RBP25.72■■□□□ 1.71
CDX1-202ENST00000616154 WWC3Q9ULE0 1092 aa25.72■■□□□ 1.71
CDX1-202ENST00000616154 GYS1P13807 737 aa25.71■■□□□ 1.71
CDX1-202ENST00000616154 RFC4P35249 363 aa25.71■■□□□ 1.71
CDX1-202ENST00000616154 AKAP4Q5JQC9 854 aa25.71■■□□□ 1.71
CDX1-202ENST00000616154 MRC1P22897 1456 aa25.7■■□□□ 1.71
CDX1-202ENST00000616154 TGFB2P61812 414 aa25.69■■□□□ 1.7
CDX1-202ENST00000616154 ADAMTS7Q9UKP4 1686 aa25.69■■□□□ 1.7
CDX1-202ENST00000616154 BRCA1P38398 1863 aaKnown RBP25.68■■□□□ 1.7
CDX1-202ENST00000616154 CRKLP46109 303 aaKnown RBP25.68■■□□□ 1.7
CDX1-202ENST00000616154 CCDC87Q9NVE4 849 aa25.67■■□□□ 1.7
CDX1-202ENST00000616154 NPC1L1Q9UHC9 1359 aa25.67■■□□□ 1.7
CDX1-202ENST00000616154 SLC52A2Q9HAB3 445 aa25.66■■□□□ 1.7
CDX1-202ENST00000616154 HMOX1P09601 288 aa25.65■■□□□ 1.7
CDX1-202ENST00000616154 GPBP1L1Q9HC44 474 aaPredicted RBP25.65■■□□□ 1.7
CDX1-202ENST00000616154 PARP3Q9Y6F1 533 aa25.65■■□□□ 1.7
CDX1-202ENST00000616154 LGR6Q9HBX8 967 aa25.64■■□□□ 1.7
CDX1-202ENST00000616154 USP42Q9H9J4 1324 aaKnown RBP25.64■■□□□ 1.7
CDX1-202ENST00000616154 DIAPH1O60610 1272 aaKnown RBP25.63■■□□□ 1.69
CDX1-202ENST00000616154 CC2D1BQ5T0F9 858 aaKnown RBP25.63■■□□□ 1.69
CDX1-202ENST00000616154 RNMTO43148 476 aaKnown RBP25.63■■□□□ 1.69
CDX1-202ENST00000616154 INTS5Q6P9B9 1019 aaKnown RBP25.63■■□□□ 1.69
CDX1-202ENST00000616154 COL3A1P02461 1466 aaPredicted RBP25.62■■□□□ 1.69
CDX1-202ENST00000616154 KCPQ6ZWJ8 1503 aa25.62■■□□□ 1.69
CDX1-202ENST00000616154 A0A0G2JLW4 131 aa25.62■■□□□ 1.69
CDX1-202ENST00000616154 SRP68Q9UHB9 627 aaKnown RBP25.62■■□□□ 1.69
CDX1-202ENST00000616154 ARFGEF1Q9Y6D6 1849 aa25.61■■□□□ 1.69
CDX1-202ENST00000616154 MTHFSDQ2M296 383 aaKnown RBP25.61■■□□□ 1.69
CDX1-202ENST00000616154 DNAJC10Q8IXB1 793 aa25.61■■□□□ 1.69
CDX1-202ENST00000616154 UBR2Q8IWV8 1755 aa25.6■■□□□ 1.69
CDX1-202ENST00000616154 DPEP1P16444 411 aa25.6■■□□□ 1.69
CDX1-202ENST00000616154 BCS1LQ9Y276 419 aa25.6■■□□□ 1.69
CDX1-202ENST00000616154 FKBP8Q14318 412 aa25.59■■□□□ 1.69
CDX1-202ENST00000616154 ZNF526Q8TF50 670 aaPredicted RBP25.59■■□□□ 1.69
CDX1-202ENST00000616154 SOS1Q07889 1333 aaPredicted RBP25.57■■□□□ 1.68
CDX1-202ENST00000616154 DDR1Q08345 913 aa25.57■■□□□ 1.68
CDX1-202ENST00000616154 SLC39A6Q13433 755 aa25.57■■□□□ 1.68
CDX1-202ENST00000616154 CYP19A1P11511 503 aaPredicted RBP25.56■■□□□ 1.68
CDX1-202ENST00000616154 CEP350Q5VT06 3117 aa25.55■■□□□ 1.68
CDX1-202ENST00000616154 FCHSD2O94868 740 aa25.54■■□□□ 1.68
CDX1-202ENST00000616154 KCNA3P22001 575 aa25.54■■□□□ 1.68
CDX1-202ENST00000616154 VSIG10Q8N0Z9 540 aa25.54■■□□□ 1.68
CDX1-202ENST00000616154 SIPA1L3O60292 1781 aaPredicted RBP25.53■■□□□ 1.68
CDX1-202ENST00000616154 ZPR1O75312 459 aa25.53■■□□□ 1.68
CDX1-202ENST00000616154 AFDNP55196 1824 aaKnown RBP25.53■■□□□ 1.68
CDX1-202ENST00000616154 POLRMTO00411 1230 aaKnown RBP25.52■■□□□ 1.68
CDX1-202ENST00000616154 TM4SF1P30408 202 aa25.52■■□□□ 1.68
CDX1-202ENST00000616154 COL15A1P39059 1388 aa25.52■■□□□ 1.68
CDX1-202ENST00000616154 USPL1Q5W0Q7 1092 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms